PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000365.1_g000038.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 213aa    MW: 23189.6 Da    PI: 7.0575
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000365.1_g000038.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-173090257
                               T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               ++R+++t++q+++L++++ +  ++p+ e++++++ +l     ++ ++V++WFqN++ +e++
  Rmu_sc0000365.1_g000038.1 30 STRWAPTADQIRILKDFYDNgGKNPTPEQIQRITLQLkrygLVENKNVFYWFQNHKSRERQ 90
                               58*****************99****************99988899**************97 PP
2Wus_type_Homeobox104.57.1e-342992265
          Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                               ++tRW+Pt++Qi+iL++ y++G ++P+ e+iqrit +L++yG +e+kNVfyWFQN+k+Rerqk+
  Rmu_sc0000365.1_g000038.1 29 SSTRWAPTADQIRILKDFYDNGGKNPTPEQIQRITLQLKRYGLVENKNVFYWFQNHKSRERQKK 92
                               689***********************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MEPQTQQPTE DGGSNKAVGS SANMHCRRSS TRWAPTADQI RILKDFYDNG GKNPTPEQIQ  60
RITLQLKRYG LVENKNVFYW FQNHKSRERQ KKKLTSDVHV PMQRSGLVGG SINLNFGSTS  120
STGVDGSINL NFGSTCSAGV GGSIMEQRGE DHQEIETLPL FPMHGEDIFG NMKTTFEGGS  180
GYGYYSGGWD GNNGGSRISL ELSLNSSGSA DVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-27WOX family protein