PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000373.1_g000024.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-YB

Protein Properties

Length: 291aa MW: 31946 Da PI: 5.77

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000373.1_g000024.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	30.9	6.5e-10	188	236	47	95
NF-YB 47 tseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 ++ a+d c+ kr+tin dd+l al ++ f +++eplk+ l+ re ++ Rmu_sc0000373.1_g000024.1 188 GTPANDICKGSKRQTINDDDVLKALEDIEFPEFIEPLKASLEGLREKNA 236 5679*****************************************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MLTLAQAATS EANRATMKAN KTKDIILMTR LMNDALQNEY LNEENPGKLW NVLDYNSEAF 60 RIKSLIESCG KNITDTMFIK KTLSTFLASA LMISKNYRID PPLTHNGVGS SPLMNSGDHI 120 NLSLSLPPSS PFSTVVEAQS EAIRIASSLT LKSVRHQGSQ FVVMQHGFDS NKDSDTVVDA 180 QIGGHAMGTP ANDICKGSKR QTINDDDVLK ALEDIEFPEF IEPLKASLEG LREKNARKKA 240 GTSKATEAKT KEAKTKEVKK KRKLEEPPPK EEEENQDEDG GDSASESSSK E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	259	264	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	7e-13	NF-YB family protein