PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000379.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24894.1 Da    PI: 9.1263
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000379.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.31.5e-1122541547
                               HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                     SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkly 47
                                R++ ++KKAeELS LC+++v++i++  + ++ 
  Rmu_sc0000379.1_g000004.1 22 DRKKNLIKKAEELSKLCGVDVCLILYQRQSTIA 54
                               6************************98877764 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MDPQRNIQEL SSSKSDRKKV RDRKKNLIKK AEELSKLCGV DVCLILYQRQ STIAETWPQD  60
PAQVKRIITG YKANPAIRDA SIPSSETKGL EETKPRKSDG GRENVINNSD EEREMLYPTW  120
DDRLDYCSED ELFRLVTSLD AKLEASTKRI DSLSMKSCSG FVTPKNKRSK AGALDHHDKV  180
NSNLNSVPFR EINLDDPRSS RNYSGIPTMQ FMRSSYMQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.15e-16M-type_MADS family protein