PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000384.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 150aa    MW: 16781.7 Da    PI: 7.8547
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000384.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94.1e-095779527
                               --SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                                C++f +tG+C+yGd Ck+ H++
  Rmu_sc0000384.1_g000012.1 57 VCNRFIKTGFCQYGDACKYFHPK 79
                               7********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    
MPLGKYDCEY CDKQFQDTPY GRRRHLQSLQ HLRAKAQWYD SFKDPNDAYA QSLGRGVCNR  60
FIKTGFCQYG DACKYFHPKN NQQNTMTQGA SGVTDNSQSS TFQGNQTAAG SSLPDVVVRD  120
NMGMSWGNLP PSLMPPPEGG YPPLPFVDWG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.17e-25C3H family protein