PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000401.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 620aa MW: 67545.3 Da PI: 7.8313

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000401.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.8	1.4e-06	374	386	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 +CkyG++C+F+H+ Rmu_sc0000401.1_g000006.1 374 ECKYGAQCRFHHP 386 6***********8 PP
2	zf-CCCH	35.1	2.3e-11	525	543	8	26
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 ++++tG+CkyG++C+F+H+ Rmu_sc0000401.1_g000006.1 525 YYMKTGECKYGAQCRFHHP 543 9*****************8 PP
3	zf-CCCH	31.5	3.1e-10	580	599	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tG CkyG++C+F H+p Rmu_sc0000401.1_g000006.1 580 YYLKTGACKYGATCRFDHPP 599 8*****************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence
MERNRFRFMS SFAFINRVGT KKQIPVYDLG GNRFTGSIPL QTRSIVSSEL YMLRLRSNSL 60 SGHIPSRLCS LRYLHIIDLG HNNFSGTIPK CLHNLTAFAH GNLTSFDHRD YSYLGSYFET 120 ACLTLKGQEL DYDRTLNLVN SIDFSSNNLE GEIPDEVSSL IGLGTLNLSR NQLTGNIPSK 180 IGNLQLLETL DLSHNHLSGQ IPQSLSSLTS LSHLNLSFNN LSGRIPSGNQ LQTLNDSSIY 240 EGNPYLCGVP LSTVCPGDGA ADPDDGDHND DDGKFGIVVS AVLGFIIGFW SVCGTLVLSM 300 TLPFGAVCGA GEDDGPRYFS GSTLSPLPPC TSPAPTASAA RATSYMMSSW PSPDAEPGPP 360 GFKRTSEVLY EDWECKYGAQ CRFHHPIDRP AVALSTAKLS QQENVKLTLA GLPRREFPFY 420 TEIDSVPPPP RAPPTLDKQR EGSDLQTLLR RFWKRGGAVL VLRRQGPGQD AAGRSLPSHL 480 ATTGISVGFN FLGRDFHNAL ANKDQEQFTK QLLYYLGAFA GGIPYYMKTG ECKYGAQCRF 540 HHPIDRPAVA LSTTKPSQQE NVKLTLAGLP RREGAVIYVY YLKTGACKYG ATCRFDHPPP 600 GEVVAMAASQ GKSDSTGGKA

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence

MERNRFRFMS SFAFINRVGT KKQIPVYDLG GNRFTGSIPL QTRSIVSSEL YMLRLRSNSL  60
SGHIPSRLCS LRYLHIIDLG HNNFSGTIPK CLHNLTAFAH GNLTSFDHRD YSYLGSYFET  120
ACLTLKGQEL DYDRTLNLVN SIDFSSNNLE GEIPDEVSSL IGLGTLNLSR NQLTGNIPSK  180
IGNLQLLETL DLSHNHLSGQ IPQSLSSLTS LSHLNLSFNN LSGRIPSGNQ LQTLNDSSIY  240
EGNPYLCGVP LSTVCPGDGA ADPDDGDHND DDGKFGIVVS AVLGFIIGFW SVCGTLVLSM  300
TLPFGAVCGA GEDDGPRYFS GSTLSPLPPC TSPAPTASAA RATSYMMSSW PSPDAEPGPP  360
GFKRTSEVLY EDWECKYGAQ CRFHHPIDRP AVALSTAKLS QQENVKLTLA GLPRREFPFY  420
TEIDSVPPPP RAPPTLDKQR EGSDLQTLLR RFWKRGGAVL VLRRQGPGQD AAGRSLPSHL  480
ATTGISVGFN FLGRDFHNAL ANKDQEQFTK QLLYYLGAFA GGIPYYMKTG ECKYGAQCRF  540
HHPIDRPAVA LSTTKPSQQE NVKLTLAGLP RREGAVIYVY YLKTGACKYG ATCRFDHPPP  600
GEVVAMAASQ GKSDSTGGKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-31	C3H family protein