PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000401.1_g000007.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 186aa MW: 20429.5 Da PI: 8.9796

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000401.1_g000007.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28	3.8e-09	4	24	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +f+++tG+CkyG+ CkF+H++ Rmu_sc0000401.1_g000007.1 4 HFYLKTGQCKYGAPCKFNHPK 24 59*****************96 PP
2	zf-CCCH	40.1	5.9e-13	142	165	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ++++tGtCkyG++C+F H+p Rmu_sc0000401.1_g000007.1 142 VICVYYLETGTCKYGATCRFDHPP 165 68********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence
MFKHFYLKTG QCKYGAPCKF NHPKDIQIPS ATQENKSGET ETAIKTEGFE VAVKPLVSFS 60 AALLYYSKEL PVRPGEADCP FYLKTGRWER ALLFVLSALD RLSVKFHHPI DRPAVALSTT 120 KPSQQENVKL TLAGLPRREG AVICVYYLET GTCKYGATCR FDHPPPGEVV AMAASQAKSD 180 STGGKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	3e-43	C3H family protein