PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000401.1_g000014.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 404aa MW: 43721.6 Da PI: 7.977

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000401.1_g000014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.2	1.5e-09	88	112	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+G+ CkF H+ Rmu_sc0000401.1_g000014.1 88 GEKDCAHYMQTRTCKFGEGCKFDHP 112 7889********************8 PP
2	zf-CCCH	38.5	1.9e-12	142	166	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tG+CkyG++CkF+H++ Rmu_sc0000401.1_g000014.1 142 EPACAFYLKTGQCKYGATCKFNHPK 166 689********************96 PP
3	zf-CCCH	41.8	1.8e-13	303	327	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C ++++tG+CkyG++C+F+H+ Rmu_sc0000401.1_g000014.1 303 GQAECEYYMKTGECKYGAQCRFHHP 327 789*********************8 PP
4	zf-CCCH	38.7	1.6e-12	360	383	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ++++tGtCkyG++C+F H+p Rmu_sc0000401.1_g000014.1 360 AICVYYLKTGTCKYGATCRFDHPP 383 68********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MYLSGTDGLV AYSDVARATS YMMSSWPAPD AEPCPPGFKR TSEALCHQAL LGAHNPIGQM 60 EAWYSTNPLA KRPRFENTSL PIYPQRPGEK DCAHYMQTRT CKFGEGCKFD HPIWVPDGGI 120 PDWKECASEN GDVYALPERP SEPACAFYLK TGQCKYGATC KFNHPKDIQI PSATQENKSG 180 ETETDLKTEG SEVAVKPLVS FTPALLYNSK QLPVRPGEAD CPFYLKTGRR PKTHNGVCSL 240 KSAASMGPLA DINPPVAAIS YPLSAPSVAV FNMGVANPAA FTNQTLAQPT VGASPTVYPQ 300 RFGQAECEYY MKTGECKYGA QCRFHHPIDR PAVALSTTKP SQQENVKLTL AGLPRREGAA 360 ICVYYLKTGT CKYGATCRFD HPPPGEVVAM AASQAKSDSI GGKA

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MYLSGTDGLV AYSDVARATS YMMSSWPAPD AEPCPPGFKR TSEALCHQAL LGAHNPIGQM  60
EAWYSTNPLA KRPRFENTSL PIYPQRPGEK DCAHYMQTRT CKFGEGCKFD HPIWVPDGGI  120
PDWKECASEN GDVYALPERP SEPACAFYLK TGQCKYGATC KFNHPKDIQI PSATQENKSG  180
ETETDLKTEG SEVAVKPLVS FTPALLYNSK QLPVRPGEAD CPFYLKTGRR PKTHNGVCSL  240
KSAASMGPLA DINPPVAAIS YPLSAPSVAV FNMGVANPAA FTNQTLAQPT VGASPTVYPQ  300
RFGQAECEYY MKTGECKYGA QCRFHHPIDR PAVALSTTKP SQQENVKLTL AGLPRREGAA  360
ICVYYLKTGT CKYGATCRFD HPPPGEVVAM AASQAKSDSI GGKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-143	C3H family protein