PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000401.1_g000026.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 450aa MW: 48543.1 Da PI: 8.2167

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000401.1_g000026.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.5	8.2e-12	145	171	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++t+ C++f++t Ck+G rCkF+H++ Rmu_sc0000401.1_g000026.1 145 PGTPDCPYFLKTQRCKFGLRCKFNHPK 171 68***********************96 PP
2	zf-CCCH	38.3	2.2e-12	194	218	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tG+CkyG++CkF+H++ Rmu_sc0000401.1_g000026.1 194 EPACAFYLKTGQCKYGATCKFNHPK 218 689********************96 PP
3	zf-CCCH	38.2	2.4e-12	268	293	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ Rmu_sc0000401.1_g000026.1 268 PGEADCPFYLKTGSCKYGATCRYNHP 293 57899********************9 PP
4	zf-CCCH	41.6	2.1e-13	349	373	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C ++++tG+CkyG++C+F+H+ Rmu_sc0000401.1_g000026.1 349 GQAECEYYMKTGECKYGAQCRFHHP 373 789*********************8 PP
5	zf-CCCH	38.8	1.6e-12	406	429	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ++++tGtCkyG++C+F H+p Rmu_sc0000401.1_g000026.1 406 VICVYYLKTGTCKYGATCRFDHPP 429 68********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MASHLFTYGA AESAPALTPA LSTVYTPRSL AQSYLSDPTH RYLSGSDPLS TSSMYLAGTD 60 GLGAYSDAAR ATSYMMSSWP APDAEPGPPG FKRTSEGCTL KIFGMVAFIM KEDFSVKDLK 120 PRMVKDIIAN HVPLVAPSES LPERPGTPDC PYFLKTQRCK FGLRCKFNHP KDKLATAGAS 180 ENGDVYALPE RPSEPACAFY LKTGQCKYGA TCKFNHPKDI QIPSATQENK SGETETDLKT 240 EGSEVAVKPL VSFTPALLYN SKELPVRPGE ADCPFYLKTG SCKYGATCRY NHPDRYDINP 300 PVAAISYPLS APSVAGFNIG VANPAAFTYQ TLAQPTVGAS PTVYPQRFGQ AECEYYMKTG 360 ECKYGAQCRF HHPIDRPAVA LSTTKPSQQE NVKLTLAGLP RREGAVICVY YLKTGTCKYG 420 ATCRFDHPPP GEVVAMAASQ AKSDSTGGKA

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MASHLFTYGA AESAPALTPA LSTVYTPRSL AQSYLSDPTH RYLSGSDPLS TSSMYLAGTD  60
GLGAYSDAAR ATSYMMSSWP APDAEPGPPG FKRTSEGCTL KIFGMVAFIM KEDFSVKDLK  120
PRMVKDIIAN HVPLVAPSES LPERPGTPDC PYFLKTQRCK FGLRCKFNHP KDKLATAGAS  180
ENGDVYALPE RPSEPACAFY LKTGQCKYGA TCKFNHPKDI QIPSATQENK SGETETDLKT  240
EGSEVAVKPL VSFTPALLYN SKELPVRPGE ADCPFYLKTG SCKYGATCRY NHPDRYDINP  300
PVAAISYPLS APSVAGFNIG VANPAAFTYQ TLAQPTVGAS PTVYPQRFGQ AECEYYMKTG  360
ECKYGAQCRF HHPIDRPAVA LSTTKPSQQE NVKLTLAGLP RREGAVICVY YLKTGTCKYG  420
ATCRFDHPPP GEVVAMAASQ AKSDSTGGKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-134	C3H family protein