PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000405.1_g000011.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 238aa    MW: 27092.4 Da    PI: 9.6832
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000405.1_g000011.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.14.9e-25101741128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknra.... 77 
                                lp+G+rF+Ptdeelvv+yL++kv+g +l++ ++i++   + y  +P++Lp+   ++ ++ yfF +++ + + ++k++nr+    
  Rmu_sc0000405.1_g000011.1  10 LPVGYRFDPTDEELVVHYLRRKVHGLPLPA-SIIPDYnnNYYFDHPSHLPMPPGETMQKRYFFYNSEYNDEkSKKNNNRSnykr 92 
                                799***************************.7899885334555*****96444444566666665544441344445544556 PP

                        NAM  78 ....tksgyWkatgkdkevlsk....kgel..........vglkktLvfy............kgrapkge.........ktdWv 122
                                    +  g W++ gk+k+++++    +  +           g++ktLvf             +                + +W+
  Rmu_sc0000405.1_g000011.1  93 aaaaAGCGSWRSIGKEKQIVATthsdH--QsscsqaqlavLGVRKTLVFCgshrkketkhhyH------YqhqygslssSPRWF 168
                                665566899***********9866541..155666777879********97665554444331......033333333377899 PP

                        NAM 123 mheyrl 128
                                mhey+l
  Rmu_sc0000405.1_g000011.1 169 MHEYNL 174
                                999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MNGGGGVQML PVGYRFDPTD EELVVHYLRR KVHGLPLPAS IIPDYNNNYY FDHPSHLPMP  60
PGETMQKRYF FYNSEYNDEK SKKNNNRSNY KRAAAAAGCG SWRSIGKEKQ IVATTHSDHQ  120
SSCSQAQLAV LGVRKTLVFC GSHRKKETKH HYHYQHQYGS LSSSPRWFMH EYNLLGSEVL  180
GNSWILCSVF QKRRKPASKK RGRTSTLDIT GSGYLPKPSN SCSSEITTDD QEVFSKCY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.27e-24NAC family protein