PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000414.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 418aa    MW: 47461.4 Da    PI: 9.3776
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000414.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.71.1e-18695297
                               EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                         B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                               f +l+ s++lk ++l +p +fa++h  +   s+ +tl  + g +W+v l  +k ++ y++++GW++F +   +++g f++F+++g+
  Rmu_sc0000414.1_g000006.1  6 FEKLILSSTLKAKQLKIPENFAKKHRDE--FSTYVTLSVPGGHVWRVGL--KKADNNYWFQDGWQDFIERYSIRTGYFLIFRYEGN 87
                               56677899999999***********855..8899***************..*********************************** PP

                               SEE..EEEEE CS
                         B3 88 sefelvvkvf 97
                               s+f  +v+++
  Rmu_sc0000414.1_g000006.1 88 SSF--TVHIY 95
                               ***..66664 PP
2B361.31.6e-19299390499
                                E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                         B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                                vl ps+  + ++++lp  fae++ +g++     ++l++ +g++W v++ yr+++    l++GW eF  +n+L egD++vF+l +
  Rmu_sc0000414.1_g000006.1 299 VLRPSYLYRGCIMYLPSCFAEKNlSGVSG---FIKLQSADGKQWPVRCLYRGGR--AKLSQGWYEFTVENNLLEGDVCVFELLK 377
                                78899******************866743...5***************665555..66************************99 PP

                                SSEE..EEEEE-S CS
                         B3  87 rsefelvvkvfrk 99 
                                ++e  l+v vfr 
  Rmu_sc0000414.1_g000006.1 378 TKEIVLKVNVFRV 390
                                9999999999985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    
MKHPYFEKLI LSSTLKAKQL KIPENFAKKH RDEFSTYVTL SVPGGHVWRV GLKKADNNYW  60
FQDGWQDFIE RYSIRTGYFL IFRYEGNSSF TVHIYNLTTA EINYPPNTLS GGGGTVYGNH  120
YQVFEEIEDE DSVEILGSSP SSIVTSSMRD RLFGDSANQL TPGKNYSPPS LQNLFNGAKH  180
NWTDAGKLHT PKVAALQEGN NSTQDNGTQH KKSKKTLDEI KSCTPGEGTE SVKKTVRKRR  240
KRDPNAQESS AQHEQDVEIR FRFYESASAR KRTVTAEERE RAVNTAKTFE PVNPFCRVVL  300
RPSYLYRGCI MYLPSCFAEK NLSGVSGFIK LQSADGKQWP VRCLYRGGRA KLSQGWYEFT  360
VENNLLEGDV CVFELLKTKE IVLKVNVFRV QEDAGFVTQS FVNQPSGQNI IQAIPLRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-134B3 family protein