PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000420.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 234aa    MW: 25566.8 Da    PI: 6.4042
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000420.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.21.2e-42601591100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq
  Rmu_sc0000420.1_g000003.1  60 PCAACKILRRRCAEKCVLAPYFPPSEPAKFTIAHRVFGASNIIKFLQDLPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQ 143
                                7*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallkee 100
                                +q++ l+a+la++++e
  Rmu_sc0000420.1_g000003.1 144 KQVSDLQAQLAKAQAE 159
                                ***********99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MECSTDTSIN TTNTTYAPST PFSHQSPSSS QSSSPPITPT QTVTQAQTQI PPPQNVVVSP  60
CAACKILRRR CAEKCVLAPY FPPSEPAKFT IAHRVFGASN IIKFLQDLPE SQRADAVSSM  120
VYEASARIRD PVYGCAGAIC HLQKQVSDLQ AQLAKAQAEV VNMQCQQANL VALLMEMAKP  180
DHHEQGSPDQ QSLDHHNFIT SPLPHSNILN QSNLSFLDDH NSALGAFWEL PLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.18e-77LBD family protein