PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000433.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 148aa    MW: 15912 Da    PI: 9.5073
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000433.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.91.7e-101255245
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                               +i ++  r v f++Rr+g++KKA+ L  + +  +a+ ++s+tg+
  Rmu_sc0000433.1_g000010.1 12 PITDYQSRMVAFTRRRTGLFKKAQKLEEMSGSSIAIAVISETGQ 55
                               7999**************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MGTGKKKIDI EPITDYQSRM VAFTRRRTGL FKKAQKLEEM SGSSIAIAVI SETGQPYLHG  60
SPSLLERVLA SKASSSTVTG SSTTTADAGS STTTATTGYL ERFKAGVNSQ IEACTTLEEA  120
ESLNRKLLEI KKRADDKLSG SDLQFVLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-14M-type_MADS family protein