PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000441.1_g000133.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28811.4 Da    PI: 7.5944
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000441.1_g000133.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.91.1e-272372150
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                               k+ien s rqvtfskRr g++KKA ELSvLCdae+aviifs+tgklye s
  Rmu_sc0000441.1_g000133.1 23 KKIENLSSRQVTFSKRRSGLFKKAAELSVLCDAEIAVIIFSQTGKLYEQS 72
                               68*********************************************965 PP
2K-box29.92.3e-1110719413100
                      K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                                +++ lq++++ ++++ie Lq e+ +++G++L+sLsl++L +Le+q  ++   +++kK+e+l e+ +++ k  +++ ++ ++L++
  Rmu_sc0000441.1_g000133.1 107 DSSALQRKFEAMQQKIEALQLELCRMKGQKLDSLSLNDLYELEKQQMEGELAVKNKKEEILSEEKQKTTKEHEKAMQKIENLER 190
                                5678999*********************************************************99999998888889999999 PP

                      K-box  97 klee 100
                                ++ee
  Rmu_sc0000441.1_g000133.1 191 EIEE 194
                                9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MVGNDTGRNS QTRKMGRGKI EIKKIENLSS RQVTFSKRRS GLFKKAAELS VLCDAEIAVI  60
IFSQTGKLYE QSSTRYHNFS NKQGLLQLEY SSEERPHESA EEEQRFDSSA LQRKFEAMQQ  120
KIEALQLELC RMKGQKLDSL SLNDLYELEK QQMEGELAVK NKKEEILSEE KQKTTKEHEK  180
AMQKIENLER EIEELRRQNY VRPSIIESHP PKKRLLYFTN SSKAVSNCST ASEHESDEHS  240
DTSLQLGYV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-36MIKC_MADS family protein