PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000488.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 320aa MW: 35985.4 Da PI: 4.7706

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000488.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.2	1.5e-09	249	281	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L+ +gL++rq+ +WF N+R ++ Rmu_sc0000488.1_g000009.1 249 PYPTEEEKMQLSVATGLDQRQINNWFINQRKRH 281 8*****************************885 PP
2	ELK	31	5.7e-11	201	222	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL+ Lk+ F+ Rmu_sc0000488.1_g000009.1 201 ELKDMLLHKYSGYLSKLKKDFL 222 9********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MNIISSSSEN VNQVQNDTRT TATCGGAGYH GGPLILSDGN LNLNMLQFET DQSMNQLIKT 60 QIANHPRYPD LVSAYIDCQK VGAPPEMKSL LEEIGRLSLP ISTCRSEIGA DPELDEFMDS 120 YCGILHTYKE ELSKPVVEAT AFLSNIELQL SNLCKGTFQK PNSDYHSTDE AVGSSEEDLS 180 YGEVEAAEGQ EISAFRACDR ELKDMLLHKY SGYLSKLKKD FLKTRKKGKL PKDARSALLD 240 WWNTHYRWPY PTEEEKMQLS VATGLDQRQI NNWFINQRKR HWKPSEDMKF ALMENVSGSI 300 NGEGGPSMLF DTGFGNDDIM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	5e-86	TALE family protein