PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000493.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 802aa    MW: 88717 Da    PI: 6.9011
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000493.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.93.8e-23168269199
                                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F ++++L +gD
  Rmu_sc0000493.1_g000006.1 168 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFISQKNLVSGD 250
                                99****************************963.3445679******************************************* PP

                                EEEEEE-SSSEE..EEEEE-S CS
                         B3  79 fvvFkldgrsefelvvkvfrk 99 
                                 v+F   + +++el+++++r+
  Rmu_sc0000493.1_g000006.1 251 AVLFL--RGENGELRLGIRRA 269
                                *****..4499999****996 PP
2Auxin_resp1219.3e-40294375182
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                                +a+a+stks+F+v+Y+Pras++eFv++++k+++++ ++v++G+Rfkm+f+ +ds+err+sG+v+g+sdldp+rWp+SkWr+L
  Rmu_sc0000493.1_g000006.1 294 VANAVSTKSMFHVFYSPRASHAEFVIPYQKYVRSIATPVTMGTRFKMRFDRDDSPERRCSGVVTGISDLDPYRWPKSKWRCL 375
                                689******************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    
MEFDLNHAVV GDVVEKNAYC NGDCDKGGCA HCLSSSTSSC SSNSSSVPVI SSIYLELWHA  60
CAGPLISLPK KGNVVVYFPQ GHLEQVASSS PPFSSMEKLH FDLQPQIFCK VVNVQLLANK  120
ENDEVYTHVT LLPQAESAGM NLEGKELEEL GVDEGDGGSP TKSTPHMFCK TLTASDTSTH  180
GGFSVPRRAA EDCFPPLDYK QQRPSQELVA KDLHGVEWRF RHIYRGQPRR HLLTTGWSIF  240
ISQKNLVSGD AVLFLRGENG ELRLGIRRAG RPRNGLPDSV IGNQNSYSSV LSPVANAVST  300
KSMFHVFYSP RASHAEFVIP YQKYVRSIAT PVTMGTRFKM RFDRDDSPER RCSGVVTGIS  360
DLDPYRWPKS KWRCLMVRWD DDIGNDHQER VSLWEIDHSV SLPPLSIQSS PRLKKLRTSL  420
QAFPPNHSIP AGSCGLMDFE ETVKSSKVLQ GQENMGFISP HYGCDALKSP VDFEMQPSAH  480
QNLASHVSQK ATIGEFMRAH HNSYTGFAES DRFPKVLQGQ EICPLRSLTG KANFNLGNWE  540
SNLGSTSFNS YQAPKPNMFT LGSESLLNMY FPYGDIHKVG QDPMICSNTT NFPRESIKAN  600
PYSIQMGVTR NEVGRPKKPS EHQPQESTSA LPTLVTNIKN PKEVSADGTA NGCKLFGFSL  660
SGETPTLSQS SSKRSCTKVH KQGSLVGRAI DLSKLNGYGD LLSELERLFS MEGLLRDPNK  720
GWRILYTDSE NDVMVVGDDP WHEFCNVVSK IHIYTQEEVE KMTIGMISDD TQSCLEQAPP  780
MLEVSKSSSV GQPDSSPTAI RV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein