PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000515.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 528aa    MW: 59169.8 Da    PI: 6.9495
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000515.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3841.4e-26130231199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f k+ltpsd++++g +++pk++aee+        +++ +  +lt +d++g +W +++iyr++++r++lt+GW+ Fv a++L  g
  Rmu_sc0000515.1_g000001.1 130 FSKILTPSDTSTHGGFSVPKRHAEECfpplemfHQPPVQ--ELTTKDLHGVEWHFRHIYRGQPKRHLLTSGWSTFVTAKKLVPG 211
                                88*****************************96444444..8****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D ++F   + +++el+v+++r+
  Rmu_sc0000515.1_g000001.1 212 DACIFV--RGENGELRVGICRA 231
                                ******..449999******97 PP
2Auxin_resp98.41e-32256338183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                a ha+ t+++F+v+Y+P++s+  F++++++++k+ k ++svGmRf+m fe e+++e+r+ Gt+++++d dpvrWp S+W +Lk
  Rmu_sc0000515.1_g000001.1 256 AFHAICTGTMFTVYYRPWTSPVPFIIPYDQYMKSPKDEYSVGMRFRMWFEAEECAEKRCEGTIIDIKDKDPVRWPSSEWGCLK 338
                                6799****************************************************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    
MAGSVSGEQQ SAYPVNNRRG DKDDLYTQLW HTCAGSNIYV PRPGDKVFYF AQGHIEQVEA  60
YADPDSNAAM PKYNLPPKIL CHVVNVQLKA EVHTDEVFAQ ITLLPVTEQD QLSFEDENAP  120
SLPHRTRTCF SKILTPSDTS THGGFSVPKR HAEECFPPLE MFHQPPVQEL TTKDLHGVEW  180
HFRHIYRGQP KRHLLTSGWS TFVTAKKLVP GDACIFVRGE NGELRVGICR ATKTQDNATA  240
SLISGNSMQH GILASAFHAI CTGTMFTVYY RPWTSPVPFI IPYDQYMKSP KDEYSVGMRF  300
RMWFEAEECA EKRCEGTIID IKDKDPVRWP SSEWGCLKVQ WDTTSATLLH SERLSPWNIE  360
PAESTKTKRT SFPAPPHKRP RIPDLSLPVF SGLARNGPFP LIIPQRREKV FQGQEISETH  420
ATELGAPMYD PLHQSPSSSI AFSSENMLTP GHINQWPSQL TTFGVFDSVP FSRSMSVPNI  480
NSSGSQELSA SKQRRETQGP FAPSNTLMLF GVNLNNSHSE LPSPQVAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-151ARF family protein