PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000534.1_g000007.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 443aa MW: 48806.9 Da PI: 10.2496

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000534.1_g000007.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5e-05	84	106	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C C+ksF+++ L +H+++ H Rmu_sc0000534.1_g000007.1 84 SCYVCKKSFPSSQFLYSHMMRlH 106 7*******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MKSFQAKQQV PDHVRDRILN NNGKSLGSCP NVRVYSQQRP HYLLPKKIIS KFNPPKQHQQ 60 QQQRYHYPPS NPSKLNAGIS SSLSCYVCKK SFPSSQFLYS HMMRLHPERG LKGVLLPQQA 120 PMMKSVILSQ SQSSNERGKK GVLPPQQAPM MKSVIPSQSL ASNERGMKGA LPPQQAPMMK 180 SVIPTQSLSS NERGMKGVLP PQQALMMKSV IPSQSVSSNE RGMKGVLQPR APISPIKSVV 240 PSRFGSSSAS ELSDVKEPDC DPVKLLLSWG KKDRRGRTNN PCPCACNAAI ASLQKPNETT 300 EATKSSSSIP RSTRNTLIAN QQNPKPSSST STTDNEISLI DTKMMKMTKK HKCSICHKEF 360 DTGQALGGHK SSSACRAVRE TKLIVSAVHE HAPQVVVSTT KKTMDDIEEG EIIEDGEITD 420 EEGSQRISHK MFNFDLNELP SEE

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MKSFQAKQQV PDHVRDRILN NNGKSLGSCP NVRVYSQQRP HYLLPKKIIS KFNPPKQHQQ  60
QQQRYHYPPS NPSKLNAGIS SSLSCYVCKK SFPSSQFLYS HMMRLHPERG LKGVLLPQQA  120
PMMKSVILSQ SQSSNERGKK GVLPPQQAPM MKSVIPSQSL ASNERGMKGA LPPQQAPMMK  180
SVIPTQSLSS NERGMKGVLP PQQALMMKSV IPSQSVSSNE RGMKGVLQPR APISPIKSVV  240
PSRFGSSSAS ELSDVKEPDC DPVKLLLSWG KKDRRGRTNN PCPCACNAAI ASLQKPNETT  300
EATKSSSSIP RSTRNTLIAN QQNPKPSSST STTDNEISLI DTKMMKMTKK HKCSICHKEF  360
DTGQALGGHK SSSACRAVRE TKLIVSAVHE HAPQVVVSTT KKTMDDIEEG EIIEDGEITD  420
EEGSQRISHK MFNFDLNELP SEE