PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000538.1_g000060.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 226aa    MW: 25721.2 Da    PI: 8.2174
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000538.1_g000060.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.94.6e-2044129190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                +fYn+YA e+ Fsv++s++ ksk+  ei++++++C keg++++++      ++++   rtgC ak+   k+  g ++vt++ + 
  Rmu_sc0000538.1_g000060.1  44 EFYNKYAFEARFSVQRSSTAKSKDGSEIIRQELCCRKEGHSQKHTAL---PKKRKGIIRTGCLAKIAAVKR-CGIYVVTQFTEA 123
                                6***************************************9998777...7888999*********98888.8*********** PP

                       FAR1  85 HnHela 90 
                                HnH+l+
  Rmu_sc0000538.1_g000060.1 124 HNHPLT 129
                                ****97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MFQAMNLGSV SCSTETTKVY TPQVTDELKP TKNREFRTLD ELFEFYNKYA FEARFSVQRS  60
STAKSKDGSE IIRQELCCRK EGHSQKHTAL PKKRKGIIRT GCLAKIAAVK RCGIYVVTQF  120
TEAHNHPLTT PEKVHLLPSH CQVSNATNCL TMELGLVNIL THQQISLLEV QSGGIENMGC  180
TGKDIYNYER DKREELKGHD GDMLYAHFFS TAGEEFIFQF QDRGRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-18FAR1 family protein