PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000550.1_g000023.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 187aa    MW: 20988.2 Da    PI: 6.5117
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000550.1_g000023.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000222951123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y C+ C++ Fs+   L  H++ H
  Rmu_sc0000550.1_g000023.1 29 YACTFCKRGFSNAQALGGHMNIH 51
                               89*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MERSHSVKKL DLKWTSDDQI SSLGQAKSYA CTFCKRGFSN AQALGGHMNI HRRDRARIRQ  60
YSEDQNQLST DEVKNSSTAA HHDPPRANNS EEKTSSHLEL KGTNMILRKP SYPFSTRSED  120
HEIVVRSKGK MGSSEDVQPQ LQLPFFLEEP VLASDNLAGH TNGCGEVEEL DLELRLGSEP  180
PESPRQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.16e-17C2H2 family protein