PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000573.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 732aa MW: 79007.7 Da PI: 6.1342

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000573.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.7	4.1e-32	305	362	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k Rmu_sc0000573.1_g000009.1 305 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHPK 362 7**************************************.*************85 PP
2	WRKY	102.8	1.9e-32	521	579	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+ Rmu_sc0000573.1_g000009.1 521 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 579 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence
MAGMDDNVAI IGDWVPPSPS PRDFFSSMLV DGIGSRSFLE SPSSNKAEEF WSREGNTNGK 60 NLSQENGTGD EITAMGSFSE YKSNSRGGLV DRIAARAGFN APRLNTESIR SSDLSLNSDV 120 RSPYLTIPPG LSPTTLLDSP VFLSNSLAQP SPTTGKFPFV SNGHARNSTL MTEAADKANF 180 FEDMNTSFAF KPLGESGSFF LGPTSKQSFP SIEVSVHSEN SSQSMEPTKV QNQNANNFQL 240 QPDFSRTSTE KDNGANTVSA DPRAFDTVGG STEHSPPLDE QPEEEGDQRG GGDSMAAAGG 300 GTPSEDGYNW RKYGQKQVKG SEYPRSYYKC THPNCQVKKK VERSHEGHIT EIIYKGAHNH 360 PKPPPNRRSG AIGSSNPLID MRSDVLEQGG PQTGADGDLV WASAQKATGG APDWKHDNLE 420 VTSSASAGPD YGQQSTSMQA QTGAHLESGD VVDASSTFSN DEDEDDRGTH GSVSLAYDGE 480 GDESESKRRK IEAYATEMSG ATRAIREPRV VVQTTSEVDI LDDGYRWRKY GQKVVKGNPN 540 PRSYYKCTNA GCTVRKHVER ASHDLKSVIT TYEGKHNHDV PAARNSSHVN SGPSGNMSGQ 600 ASGSAAQTHP HRPEPSQVHS NMARFERPMS MGSFSLAGRQ QLGPPQGFSF GMNQPGLANL 660 AMAGFSPGQH KVPVLPVHHP YFAQQRQVSE MGFMLPKGEP KVEPMSEPGL NMNNASSVYQ 720 QLMSRLPLGP QM

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence

MAGMDDNVAI IGDWVPPSPS PRDFFSSMLV DGIGSRSFLE SPSSNKAEEF WSREGNTNGK  60
NLSQENGTGD EITAMGSFSE YKSNSRGGLV DRIAARAGFN APRLNTESIR SSDLSLNSDV  120
RSPYLTIPPG LSPTTLLDSP VFLSNSLAQP SPTTGKFPFV SNGHARNSTL MTEAADKANF  180
FEDMNTSFAF KPLGESGSFF LGPTSKQSFP SIEVSVHSEN SSQSMEPTKV QNQNANNFQL  240
QPDFSRTSTE KDNGANTVSA DPRAFDTVGG STEHSPPLDE QPEEEGDQRG GGDSMAAAGG  300
GTPSEDGYNW RKYGQKQVKG SEYPRSYYKC THPNCQVKKK VERSHEGHIT EIIYKGAHNH  360
PKPPPNRRSG AIGSSNPLID MRSDVLEQGG PQTGADGDLV WASAQKATGG APDWKHDNLE  420
VTSSASAGPD YGQQSTSMQA QTGAHLESGD VVDASSTFSN DEDEDDRGTH GSVSLAYDGE  480
GDESESKRRK IEAYATEMSG ATRAIREPRV VVQTTSEVDI LDDGYRWRKY GQKVVKGNPN  540
PRSYYKCTNA GCTVRKHVER ASHDLKSVIT TYEGKHNHDV PAARNSSHVN SGPSGNMSGQ  600
ASGSAAQTHP HRPEPSQVHS NMARFERPMS MGSFSLAGRQ QLGPPQGFSF GMNQPGLANL  660
AMAGFSPGQH KVPVLPVHHP YFAQQRQVSE MGFMLPKGEP KVEPMSEPGL NMNNASSVYQ  720
QLMSRLPLGP QM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	0.0	WRKY family protein