PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000573.1_g000063.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 453aa    MW: 51242.1 Da    PI: 6.6304
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000573.1_g000063.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS381.11.3e-116544522373
                       GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar...svselykalppsetsekn.......s 74 
                                ++lL++cAe +s+ d++ a++l++ ls   +sp+gd+++Rl++ f++AL+  l        e+++  +++++s ++       +
  Rmu_sc0000573.1_g000063.1  54 RQLLISCAELISQLDFSSARRLISILSSSnSSPYGDSTERLVHQFVRALSLSLPAveaAPREIVSVAAATASSASTstsntllE 137
                                799***********************99879*******************9997721122233333322222222222234440 PP

                       GRAS  75 seelaal.............klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp........ 136
                                      +              ++++++P+++fshltaNqaIlea+++  +++Hi+Dfdi++G+QWp+L+qaLa+R+        
  Rmu_sc0000573.1_g000063.1 138 ------VeteaeeealqscyLTLNQITPFIRFSHLTANQAILEAIDSThHAIHILDFDIKHGVQWPPLMQALAERSygsssslh 215
                                ......1444445555443344***********************998799*************************65555444 PP

                       GRAS 137 egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrllde 216
                                +++p+lRiT+ g+    + + l++tgerL +fA++lg++f+f+++     +  ++ l++ +L + ++EalaVn+vl lhrll +
  Rmu_sc0000573.1_g000063.1 216 HPAPMLRITATGR----DLTLLRRTGERLLRFAQSLGLTFHFRPIvllnDVAMIDYLNPASLGLFSDEALAVNCVLYLHRLLTD 295
                                459**********....9**************************9654434468889*************************77 PP

                       GRAS 217 svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                                ++   +    +L+ +++l+Pk+v+v+e+ea+hns+ Fl+rf+ea+++y a+f slea+lp++s+er  vE++++grei +v a+
  Rmu_sc0000573.1_g000063.1 296 DARDLH---LFLDKIRGLNPKIVTVAEREANHNSPMFLNRFVEAVDHYGAIFGSLEATLPPNSRERLAVEQVWFGREIADVAAA 376
                                666666...9*************************************************************************9 PP

                       GRAS 301 egaerre..rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                                  ++rr+  rhe++e+W+++++++GF++vpls +a +qaklllr ++ s+gy++++ ++s++lgW++rpL+svS+W
  Rmu_sc0000573.1_g000063.1 377 DDNQRRKqlRHERYENWEMMMRRSGFSNVPLSPFALSQAKLLLRLHYpSEGYQLHSLKDSFFLGWMNRPLFSVSSW 452
                                9888665459****************************************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    
MGSFNSSHHQ RIVPQQQEDQ DPEIHPDLQL YNQQHHQYQF AQQPLLMSRG LTSRQLLISC  60
AELISQLDFS SARRLISILS SSNSSPYGDS TERLVHQFVR ALSLSLPAVE AAPREIVSVA  120
AATASSASTS TSNTLLEVET EAEEEALQSC YLTLNQITPF IRFSHLTANQ AILEAIDSTH  180
HAIHILDFDI KHGVQWPPLM QALAERSYGS SSSLHHPAPM LRITATGRDL TLLRRTGERL  240
LRFAQSLGLT FHFRPIVLLN DVAMIDYLNP ASLGLFSDEA LAVNCVLYLH RLLTDDARDL  300
HLFLDKIRGL NPKIVTVAER EANHNSPMFL NRFVEAVDHY GAIFGSLEAT LPPNSRERLA  360
VEQVWFGREI ADVAAADDNQ RRKQLRHERY ENWEMMMRRS GFSNVPLSPF ALSQAKLLLR  420
LHYPSEGYQL HSLKDSFFLG WMNRPLFSVS SWN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-115GRAS family protein