PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000609.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 108aa    MW: 12512.2 Da    PI: 7.4671
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000609.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.77.3e-122550126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                               +ktelC+ ++++G C+y d C+FaHg
  Rmu_sc0000609.1_g000001.1 25 FKTELCNKWQESGDCPYKDHCQFAHG 50
                               79***********************9 PP
2zf-CCCH20.96.4e-076387125
                               --S---SGGGGTS--TTTTT-SS-S CS
                    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                               ykte Cr  +++  C+yG rC+F H
  Rmu_sc0000609.1_g000001.1 63 YKTEVCRMVLAGDVCPYGHRCHFRH 87
                               9**********55**********88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    
QKVYVQGGKK EEVPLELEVF NQGMFKTELC NKWQESGDCP YKDHCQFAHG VEELRPVIRH  60
PRYKTEVCRM VLAGDVCPYG HRCHFRHALT EEEKELAGGN NTPSRPIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-53C3H family protein