PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000632.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 322aa    MW: 37203.1 Da    PI: 7.6461
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000632.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.71.6e-51261503127
                        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                                pGfrFhPtdeelv +yL++k+++k ++l e ik++diyk++PwdLp ++++a++kewyfF++r +ky+++ r+nr+t sg+Wka
  Rmu_sc0000632.1_g000004.1  26 PGFRFHPTDEELVGFYLRRKIQKKAISL-ELIKSIDIYKHDPWDLPkATTTAGDKEWYFFCRRGRKYKNSIRPNRVTGSGFWKA 108
                                9**************************9.99***************557777999***************************** PP

                        NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                                tg dk+v++++++ +glkktLv+y+g+a kg+ktdW+mhe+r
  Rmu_sc0000632.1_g000004.1 109 TGIDKPVHDSHSNCIGLKKTLVYYRGSAGKGTKTDWMMHEFR 150
                                *****************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MDGKNTSCKD DHHDHQDHDD EDVPLPGFRF HPTDEELVGF YLRRKIQKKA ISLELIKSID  60
IYKHDPWDLP KATTTAGDKE WYFFCRRGRK YKNSIRPNRV TGSGFWKATG IDKPVHDSHS  120
NCIGLKKTLV YYRGSAGKGT KTDWMMHEFR RPSTNDNNNV HTNHTSCTAI SHTDPQEAEI  180
WTLCRIFKRS VSHRKYTPDW RELSAKQSSS KKCNTTDQDR HQEPTNINRE SYINFGASTI  240
CYEEKKPNVL NHTNYNNGSN SNQTLQNVGQ FSSGMTTATH PCNMDSFTSS YSYADIENHD  300
FFNDNWEEFK SVVQLALDPS FV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.13e-83NAC family protein