PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000640.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 485aa MW: 52101.4 Da PI: 9.3805

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000640.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.3	6.5e-06	36	58	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C ksF + L+ H++ H Rmu_sc0000640.1_g000012.1 36 HSCNVCQKSFASLKALNGHMKIH 58 79*******************99 PP
2	zf-C2H2	12.6	0.0004	359	381	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+++F++ L H r H Rmu_sc0000640.1_g000012.1 359 HVCEICHRTFKTYQGLGGHRRIH 381 79*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MDDNEDEQTS SLPPKKRLKQ HDRRQPNHEG SSSEIHSCNV CQKSFASLKA LNGHMKIHGG 60 SKSKAARPPF PAPEPSEDKG KDDDGVSASS SSDTNIQKDV EVASFLQNLS DIEIQRNGPD 120 GPRQEGYCWK QCSRDNNAED RLGYGVSGKK AMPVPYKDNP SSKKVKIDGT TRTGSALVQK 180 KLAGGKRKAS VEDDEKGDQS RVPKDFTSNI SKKVKIVGRG EDPKRDMVSH DQTRKLQIPR 240 KPQVESNKTF PASQATETFS WNCKSSRSAS ASVKIGESGF GTKYAAKSST SLKIGESGFG 300 AKYGTKSNTS VKMGESVFGT KYAKSNTSVK VGESGFGTKL AARAPTSTKE AAVEDSKQHV 360 CEICHRTFKT YQGLGGHRRI HNSKGGVAKE APTAPEVRAA TGHEDGETGV DPQGHRSVGS 420 SRRVSVRKAP AAPVVRAPSD HEDGGSDEDP EAALHEEEAG AKTEGRHERG FNLNQVPDED 480 SDGAA

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MDDNEDEQTS SLPPKKRLKQ HDRRQPNHEG SSSEIHSCNV CQKSFASLKA LNGHMKIHGG  60
SKSKAARPPF PAPEPSEDKG KDDDGVSASS SSDTNIQKDV EVASFLQNLS DIEIQRNGPD  120
GPRQEGYCWK QCSRDNNAED RLGYGVSGKK AMPVPYKDNP SSKKVKIDGT TRTGSALVQK  180
KLAGGKRKAS VEDDEKGDQS RVPKDFTSNI SKKVKIVGRG EDPKRDMVSH DQTRKLQIPR  240
KPQVESNKTF PASQATETFS WNCKSSRSAS ASVKIGESGF GTKYAAKSST SLKIGESGFG  300
AKYGTKSNTS VKMGESVFGT KYAKSNTSVK VGESGFGTKL AARAPTSTKE AAVEDSKQHV  360
CEICHRTFKT YQGLGGHRRI HNSKGGVAKE APTAPEVRAA TGHEDGETGV DPQGHRSVGS  420
SRRVSVRKAP AAPVVRAPSD HEDGGSDEDP EAALHEEEAG AKTEGRHERG FNLNQVPDED  480
SDGAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	20	PKKRLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	6e-06	C2H2 family protein