PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000660.1_g000043.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-YC

Protein Properties

Length: 194aa MW: 21642.8 Da PI: 10.7034

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000660.1_g000043.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	43.7	5.9e-14	84	176	7	99
NF-YC 7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 e+++e+++d+k ++P+ r+k+i++a++ +is++a l+ ka e f+ +++ + + + ++++l ++++v + + ++ Rmu_sc0000660.1_g000043.1 84 EEEVEEKEDVKSYTFPMERVKRIIRAEDSDLRISSDAVFLVNKATEKFLEKFSEDAHKCCVKDRKKALAYKHLSSVVCKQKRYE 167 5789********************999999************************************************ PP NF-YC 91 flvdivprd 99 fl d vp++ Rmu_sc0000660.1_g000043.1 168 FLSDFVPEK 176 ****986 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MATPKKGTPP KKTKEAQKPS TKTSKNDGNK IKKKTSNGTA AAAAAVRSPS SKPQKSREQN 60 GGKSTKTPTP KSKKPQQNGK RVREEEVEEK EDVKSYTFPM ERVKRIIRAE DSDLRISSDA 120 VFLVNKATEK FLEKFSEDAH KCCVKDRKKA LAYKHLSSVV CKQKRYEFLS DFVPEKIKAG 180 DALAKRKQAQ EGTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	2e-33	NF-YC family protein