PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000666.1_g000010.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 504aa MW: 55747.9 Da PI: 6.1144

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000666.1_g000010.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.3e-13	355	401	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq Rmu_sc0000666.1_g000010.1 355 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYINDLQ 401 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence
MSEKLWVNEE EKVIVESVLG TEACQVLISL ASENLLSDLA RPPGQLGVQQ GLSQLVQGSS 60 WDYAIFWQVV GLKSGAAALI WGDGHCRDSK GGGVGDESSS RDSNLEGVQK KNVEVRKWVL 120 GKLHSCFGGS GEDNYVRRLD RLSDVEMFYL TSMHFKFQLD SPYGPGESYK SCKSIWVSNV 180 ASCLHHYRSR SFLARLAGFQ TVVFVPMKSG VVELGSIKSI PEEQNIVDVV RSVFGESGSV 240 QAKVYPKIFG HELSLGGPKS QPINIAFCPK VETDSSFPSE SFDLQAIGTS NGCRTEDNEV 300 KLFPHLSQIM SGNFSSTAGV SSSELPKDES SAQIDERKPR KRGRKPANGR EEPLNHVEAE 360 RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAITYINDL QMKIRVMETE KQMGNSSQMQ 420 FPVPEIDFQE RHEDALVRMN CPLDSHPVSD VIRTLKEHNI VAQDTNVSVT DDDTVIHTFS 480 IPTQGGDAEQ LKEKLVASLS KSSM

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence

MSEKLWVNEE EKVIVESVLG TEACQVLISL ASENLLSDLA RPPGQLGVQQ GLSQLVQGSS  60
WDYAIFWQVV GLKSGAAALI WGDGHCRDSK GGGVGDESSS RDSNLEGVQK KNVEVRKWVL  120
GKLHSCFGGS GEDNYVRRLD RLSDVEMFYL TSMHFKFQLD SPYGPGESYK SCKSIWVSNV  180
ASCLHHYRSR SFLARLAGFQ TVVFVPMKSG VVELGSIKSI PEEQNIVDVV RSVFGESGSV  240
QAKVYPKIFG HELSLGGPKS QPINIAFCPK VETDSSFPSE SFDLQAIGTS NGCRTEDNEV  300
KLFPHLSQIM SGNFSSTAGV SSSELPKDES SAQIDERKPR KRGRKPANGR EEPLNHVEAE  360
RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAITYINDL QMKIRVMETE KQMGNSSQMQ  420
FPVPEIDFQE RHEDALVRMN CPLDSHPVSD VIRTLKEHNI VAQDTNVSVT DDDTVIHTFS  480
IPTQGGDAEQ LKEKLVASLS KSSM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	337	345	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-163	bHLH family protein