PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000674.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 447aa    MW: 49253.8 Da    PI: 4.7961
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000674.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS299.67.7e-92494362373
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal....ppsetsekn..sseela 79 
                                ++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ +++AL +r +r +++l +      +ps++++++   +++  
  Rmu_sc0000674.1_g000006.1  49 EKLLLHCASALESNDVTLAQQVMWVLNNVASSVGDPNQRLTSWILRALISRSSRICPSLNNNGgggpNPSTSTTSTiaAERR-- 130
                                689********************************************************99874322333333333332222.. PP

                       GRAS  80 alkl........fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg. 153
                                   l        ++++ P+++f++ + N+aI +a++g++++Hi+Df+i++++QWp+L++aL +Rpegpp slR+T+ +    + 
  Rmu_sc0000674.1_g000006.1 131 ---LmtvtelagYVDLIPWHRFGYCASNSAIFQAIQGCSKIHILDFSITHCMQWPTLIDALGKRPEGPPdSLRVTVPSCRPLVp 211
                                ...123345699*****************************************************99998*****988755558 PP

                       GRAS 154 ..skeeleetgerLakfAeelgvpfefnvl.....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLkl 230
                                   + ++ee+g rL +f +  +v+fefnv+      +  l++l++ +L++k +Eal+Vn++  l +l d+++s++s+r+++L++
  Rmu_sc0000674.1_g000006.1 212 plLNVSIEEVGLRLGNFSRFRDVSFEFNVIensssFELLLSQLNPTSLNLKDDEALVVNCQNWLRYLSDDEGSTNSARNNFLNM 295
                                89999************************964443333456779**************************************** PP

                       GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                                ++ l+P+++vvv++++d++s+s+  r++ +++y +  fdsle+ lp++s++r+ +E   +g++i+n++  eg +r+er e+  +
  Rmu_sc0000674.1_g000006.1 296 IRCLNPRIIVVVDEDSDLSSPSLSSRITTCFNYLWIPFDSLETFLPKDSNQRMEYESD-IGQKIENIIGFEGVQRIERLESGVT 378
                                **********************************************************.************************* PP

                       GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                 ++rl++aGF + p+ e+++ ++k+ll +++  g+ ++ e++ lvl+Wk+++ v+++aW
  Rmu_sc0000674.1_g000006.1 379 ASQRLRNAGFLSSPFCEETVGEVKTLLDEHA-SGWGMKREEDMLVLTWKGHNSVFATAW 436
                                *******************************.889999999****************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    
MKTEVRVGSS TSIAALQNPS LLINSTTSQG SLTGALRGCL GSLDGACIEK LLLHCASALE  60
SNDVTLAQQV MWVLNNVASS VGDPNQRLTS WILRALISRS SRICPSLNNN GGGGPNPSTS  120
TTSTIAAERR LMTVTELAGY VDLIPWHRFG YCASNSAIFQ AIQGCSKIHI LDFSITHCMQ  180
WPTLIDALGK RPEGPPDSLR VTVPSCRPLV PPLLNVSIEE VGLRLGNFSR FRDVSFEFNV  240
IENSSSFELL LSQLNPTSLN LKDDEALVVN CQNWLRYLSD DEGSTNSARN NFLNMIRCLN  300
PRIIVVVDED SDLSSPSLSS RITTCFNYLW IPFDSLETFL PKDSNQRMEY ESDIGQKIEN  360
IIGFEGVQRI ERLESGVTAS QRLRNAGFLS SPFCEETVGE VKTLLDEHAS GWGMKREEDM  420
LVLTWKGHNS VFATAWVPNQ NGLMLED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-117GRAS family protein