PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000690.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CAMTA

Protein Properties

Length: 380aa MW: 42682.5 Da PI: 7.8494

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000690.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	92.3	4.3e-29	17	119	2	104
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyY 85 k +++wl +ee+ +++nfek ++ +++ +p+sgs+++y +kk ++ +DGy+wkk g++ + ekLK+ g e l cyY Rmu_sc0000690.1_g000008.1 17 NKATHQWLAPEEVDVLIQNFEKLPISDQRPVKPESGSIFFYVKKKKLHYLQDGYKWKKTDAGRSGKFSNEKLKIAGKEELRCYY 100 45599**********************************9999999******************************** PP CG-1 86 ahseenptfqrrcywlLee 104 ah+ee+++f+rr y l+e+ Rmu_sc0000690.1_g000008.1 101 AHGEEDEKFTRRWYSLIEK 119 **************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MAESTSGGCG GIEKILNKAT HQWLAPEEVD VLIQNFEKLP ISDQRPVKPE SGSIFFYVKK 60 KKLHYLQDGY KWKKTDAGRS GKFSNEKLKI AGKEELRCYY AHGEEDEKFT RRWYSLIEKP 120 GPPNLPDIID RSKRVVVHYL YDETYIPKRQ KGSKNRSEVV PELDKDLKVK RSRTSESCST 180 EIVELTEDAE ELHELVESQE ATDMEELKGV ARAPASPSVA LPQQPIPSVD QESLQASEDT 240 GVTLPGTLPC LLQQINEPEQ GELLDDWDPC VMSLQTDLEG YGGGRGGWGY GGGRGGGVYE 300 GGEFLRTSKQ RCQGFVNNID EMSRIPRRSM SRKKCGMWFR AVQRAFLCCS LKGIGLRWKP 360 KGRCVGHPSL KISSSKWGMC

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MAESTSGGCG GIEKILNKAT HQWLAPEEVD VLIQNFEKLP ISDQRPVKPE SGSIFFYVKK  60
KKLHYLQDGY KWKKTDAGRS GKFSNEKLKI AGKEELRCYY AHGEEDEKFT RRWYSLIEKP  120
GPPNLPDIID RSKRVVVHYL YDETYIPKRQ KGSKNRSEVV PELDKDLKVK RSRTSESCST  180
EIVELTEDAE ELHELVESQE ATDMEELKGV ARAPASPSVA LPQQPIPSVD QESLQASEDT  240
GVTLPGTLPC LLQQINEPEQ GELLDDWDPC VMSLQTDLEG YGGGRGGWGY GGGRGGGVYE  300
GGEFLRTSKQ RCQGFVNNID EMSRIPRRSM SRKKCGMWFR AVQRAFLCCS LKGIGLRWKP  360
KGRCVGHPSL KISSSKWGMC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	89	KKKKLHYLQDGYKWKKTDAGRSGKFSNEKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09410.2	3e-25	CAMTA family protein