PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000693.1_g000072.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 242aa    MW: 26381 Da    PI: 4.4153
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000693.1_g000072.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.85.1e-1548107457
                                -SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   4 RttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                R+t+t+ ql++L+ l++    + p+ e+++e+  +l    ++++++V++WFqN +a+e++
  Rmu_sc0000693.1_g000072.1  48 RWTPTPAQLRILQGLYYDkgYKCPTPEQIQEICLHLkpygEIEDKNVFFWFQNLKARERQ 107
                                9***************9645888***********************************97 PP
2Wus_type_Homeobox92.83.2e-3046108364
          Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                + RWtPtp Q++iL+ ly+ +G + P+ e+iq+i  +L+ yG+iedkNVf+WFQN kaRerqk
  Rmu_sc0000693.1_g000072.1  46 TIRWTPTPAQLRILQGLYYdKGYKCPTPEQIQEICLHLKPYGEIEDKNVFFWFQNLKARERQK 108
                                67***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MEPRTLQLME LQTQQQMELQ AQQPTEEEGS TQAAGSSANT PIRPTTIRWT PTPAQLRILQ  60
GLYYDKGYKC PTPEQIQEIC LHLKPYGEIE DKNVFFWFQN LKARERQKLK EFRNVRVGGS  120
LDLNFGSTSS TDDGRSIDLH FGSTGLTGDD GSIDLTLGSH VGYGVDPNSF SPFNANTRGD  180
HQEVETLPLF PVHGEDVLSN PNTTSEEGSA FGYYSGGSGG YSSGSPVSLE LSLNPSGAAD  240
LA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.18e-17WOX family protein