PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000718.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 513aa    MW: 57790 Da    PI: 9.1293
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000718.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.5e-1210703599
                               EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                         B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                                  l+ +sg +Wev+l  +++ g++++++GW eF k   L+ gDf+vF+++g+s f   v +f++
  Rmu_sc0000718.1_g000004.1 10 SAFLKLPSGSEWEVEL--TRCNGKVWFERGWPEFSKFCSLDYGDFLVFRYEGNSIF--QVCIFDR 70
                               5678889*********..**********************************9999..9999997 PP
2B341.13.2e-13326415190
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvv 81 
                                ffkv + + +++++++++p +f++++   k+ +k+ ++ + ++r W v+li    ++++ ++ l +GW  F+++++Lk gD++v
  Rmu_sc0000718.1_g000004.1 326 FFKVSLGACHMEKSNVSVPTSFIRQFI--KRLEKQTVMLQVKNRLWPVNLIPyaySNQRLSTKLCGGWIAFAREHDLKGGDVCV 407
                                667777777778888********9994..33445567777899*******653446666669999******************* PP

                                EEE-SSSEE CS
                         B3  82 Fkldgrsef 90 
                                F+l++ +++
  Rmu_sc0000718.1_g000004.1 408 FELME-MKA 415
                                **986.444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    
MKYGEDVSNS AFLKLPSGSE WEVELTRCNG KVWFERGWPE FSKFCSLDYG DFLVFRYEGN  60
SIFQVCIFDR TATEIDYPIT MPDMEKTDHE DEEDDNISIE ISEDSPPHPK TREKSPLPCP  120
PSFKKMRTSW SGKAADTMFG NDGGGSSSAR RYQKGTVEAI GEMHSLNKSE KAQALWRVDA  180
FISENPHFKV VLQPSYVQQS YLGFPVKFFK RNVIKDAGNV TLRVSNGKTW SVKFKYEKSR  240
ARLQHVAGHG RGAIEQVEHS RSSIIKVESD CSMNCDMTSI SPSPHEIGKN KRSKTSGKVA  300
QRRCSSLRVP RVNLEAANKF IPNNPFFKVS LGACHMEKSN VSVPTSFIRQ FIKRLEKQTV  360
MLQVKNRLWP VNLIPYAYSN QRLSTKLCGG WIAFAREHDL KGGDVCVFEL MEMKANINLM  420
TGPGSVVRML GRVLGHNSHT NSTLGIDPGK AWVLERLGDG AGLWGSRHCW LMAELNGAAR  480
DEVVEVLASW RGLWAALHRR LQAWWSCGMG LSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-17B3 family protein