PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000772.1_g000031.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 230aa    MW: 25592.2 Da    PI: 4.4495
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000772.1_g000031.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.46.9e-153999357
                               --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               + +t+t++ql++L+el++    + p+ e+++e+  +l    ++++++V++WFqN +a+e++
  Rmu_sc0000772.1_g000031.1 39 NQWTPTPDQLRILQELYYDkvLKCPTPEQIQEICLNLqqygQIEDKNVFFWFQNLKARERQ 99
                               57***************96679*************************************97 PP
2Wus_type_Homeobox92.34.3e-3038100364
          Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                ++ WtPtp+Q++iL+ely+ + l+ P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  Rmu_sc0000772.1_g000031.1  38 NNQWTPTPDQLRILQELYYdKVLKCPTPEQIQEICLNLQQYGQIEDKNVFFWFQNLKARERQK 100
                                689**************9868899**************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MEPRTLQLME LQAQQPTEEG GSIQAAGSSA NTPVRPTNNQ WTPTPDQLRI LQELYYDKVL  60
KCPTPEQIQE ICLNLQQYGQ IEDKNVFFWF QNLKARERQK LREFRNVRVG GSLDLNFGST  120
SSTDDGRSID LNFGSTGSTS TNRSIDLNFG SRVGYGVDGS IMEQRREYHQ EIETLPLFPM  180
HGENVLGNMK TTSEGGSGYG WYFGGWDDNN GGSCISLELS LNSSGAADMA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-24WOX family protein