PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000776.1_g000047.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 192aa    MW: 21115.3 Da    PI: 10.1281
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000776.1_g000047.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.1e-0699117523
                                TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                 Cg sF+ + +Lk+H+++H
  Rmu_sc0000776.1_g000047.1  99 ECGASFKKPAYLKKHMQSH 117
                                7****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MPRSAKDALF TSHVPLETKG HTTLSKDNSG KVLHPGLSKG ENQLRWGFIR RVYGILSSQL  60
LLIATISFVT VLYTPIKDEM EMAKAGGEVV VEKSNTYEEC GASFKKPAYL KKHMQSHSPE  120
VLFTWELVDG IYIGSRVPSS SHRATSPFSV PEPPSLPPSH LHCKSISLIS ATPSRLQSLN  180
LRPSRTGFVT KA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-08C2H2 family protein