PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000776.1_g000055.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 322aa MW: 36304.2 Da PI: 8.4922

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000776.1_g000055.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	2e-05	163	182	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Rmu_sc0000776.1_g000055.1 163 FACSICSKTFNRYNNMQMHM 182 78*****************9 PP
2	zf-C2H2	16	3.5e-05	247	269	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ Rmu_sc0000776.1_g000055.1 247 FMCRKCGKTFAVKGDWRTHEKNC 269 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MGLWNNQHQV EDYRNLCVQA APPFIEWLKP SASSSFASSL SSSSLTSFCS NSLDDQNSST 60 LQCLPLLSRF TDTKPVKRED IGVQREGFGV KEEQIEKVTV ALHIGLPNSA TADDEKKVLD 120 DVKEEDVVLP ITKNRFNSNG CSATESRFWI PTPAQILVGP MQFACSICSK TFNRYNNMQM 180 HMWGHGSEFR KGPDSLKGTQ PAAMLRLPCY CCAQGCKNNI NHPRAKPLKD FRTLQTHYKR 240 KHGAKPFMCR KCGKTFAVKG DWRTHEKNCG KLWYCSCGSD FKHKRSLKDH IRSFGKGHSP 300 RPCVDGFHED DQKECITGSE DE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-112	C2H2 family protein