PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000779.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 331aa    MW: 36873.1 Da    PI: 7.5574
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000779.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.63.8e-17144204357
                                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                +R+t+t+ ql++L+el++    +yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  Rmu_sc0000779.1_g000005.1 144 NRWTPTPAQLRILQELYYDkvLKYPTPEQIQEICLHLqqygQIEDKNVFFWFQNLKARERQ 204
                                7****************96679*************************************97 PP
2Wus_type_Homeobox94.11.2e-30142205264
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                +++RWtPtp Q++iL+ely+ + l+ P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  Rmu_sc0000779.1_g000005.1 142 TNNRWTPTPAQLRILQELYYdKVLKYPTPEQIQEICLHLQQYGQIEDKNVFFWFQNLKARERQK 205
                                579***************99688999*************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MNFAKTISEI QPIGPPPTAT VRTLIRGKPK YGPPVTAYPF RDLRKSESLS AKAVCHSASR  60
FARSPYALST RQQLFRVFGS PTQLPQLINM EPRTLQLMEL QAQQQMELQA QQQMELQAQQ  120
PTEEGGSTQA AGSSANTPIR PTNNRWTPTP AQLRILQELY YDKVLKYPTP EQIQEICLHL  180
QQYGQIEDKN VFFWFQNLKA RERQKLREFR NVRVGGSLDL NFGSTSSTDD GRSIDLNFGS  240
TGSTGTDGSI DLNFGSRVGY GVDPYSSSPF NANTSTTYFG TTGGQSFMEQ QGGDHQEVET  300
LPLFPMHGEN ILGNPKTTSE EGSAYGYYSS R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-23WOX family protein