PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000883.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HSF

Protein Properties

Length: 532aa MW: 59299.1 Da PI: 6.3376

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000883.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.3	6.9e-35	72	162	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 Fl k+y++++d++++e++sws+n++sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++ Rmu_sc0000883.1_g000011.1 72 FLLKTYDMVDDSATDEIVSWSSNKKSFVVWNPPEFARILLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEE 146 9**************************************************************999.........*** PP XXXXXXXXXXXXXXXX CS HSF_DNA-bind 86 Fkkgkkellekikrkk 101 F +++k+ll++i+r+k Rmu_sc0000883.1_g000011.1 147 FIQDQKHLLKNIHRRK 162 ************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
LAGCRAKSFE TLLFHSLLSL YTFRSPLPPS LSAVTPIRIP IQVRPAESPD PTRLCKMDGT 60 SAAGGGGGPA PFLLKTYDMV DDSATDEIVS WSSNKKSFVV WNPPEFARIL LPTYFKHNNF 120 SSFIRQLNTY GFRKIDPERW EFANEEFIQD QKHLLKNIHR RKPIHSHSNP QGSMVDQERA 180 ALDDEIEKLS NEKAALEANI SRFQQQRSAE KLQLEDLTQR VNGMEQRQKN LLTFLDKAVQ 240 NPAFVEHLAR KIESMDFSAY NKKRRLPDAD NSKPVVDNSF VDNQSSSRSE FGNFFHQDFS 300 SKLRLELSPA VSDMNLVSRS TQSSNEDGDS SSRKISEELK GAQMRTEGLL FANEPLELSD 360 TGTSFAFKMD SLSRKAPNVG SPGLHSLQPG LPSNEDSDGQ ITCHLNLTLS SSPLKVISSP 420 HSATVPLVGQ DICNSPSPGL NATNKESDIR ALPQKNLADE DRPKSSQKEA TKHSKGHTSV 480 PVRVNDVFWE QFLTERPGCS ENEEASSNFR ENPYDEQDGM ARNAKGAETL TL

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

LAGCRAKSFE TLLFHSLLSL YTFRSPLPPS LSAVTPIRIP IQVRPAESPD PTRLCKMDGT  60
SAAGGGGGPA PFLLKTYDMV DDSATDEIVS WSSNKKSFVV WNPPEFARIL LPTYFKHNNF  120
SSFIRQLNTY GFRKIDPERW EFANEEFIQD QKHLLKNIHR RKPIHSHSNP QGSMVDQERA  180
ALDDEIEKLS NEKAALEANI SRFQQQRSAE KLQLEDLTQR VNGMEQRQKN LLTFLDKAVQ  240
NPAFVEHLAR KIESMDFSAY NKKRRLPDAD NSKPVVDNSF VDNQSSSRSE FGNFFHQDFS  300
SKLRLELSPA VSDMNLVSRS TQSSNEDGDS SSRKISEELK GAQMRTEGLL FANEPLELSD  360
TGTSFAFKMD SLSRKAPNVG SPGLHSLQPG LPSNEDSDGQ ITCHLNLTLS SSPLKVISSP  420
HSATVPLVGQ DICNSPSPGL NATNKESDIR ALPQKNLADE DRPKSSQKEA TKHSKGHTSV  480
PVRVNDVFWE QFLTERPGCS ENEEASSNFR ENPYDEQDGM ARNAKGAETL TL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-161	HSF family protein