PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000898.1_g000025.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 488aa    MW: 55483 Da    PI: 4.1013
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000898.1_g000025.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.97.9e-23151492128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknr 76 
                                 pG rF P d+elv +yLk+ ++g++++  +  + ++d+y+  ePw++ +++k+        +k++yfF++++k ++t+kr +r
  Rmu_sc0000898.1_g000025.1  15 LPGQRFCPMDDELVLFYLKPMLSGQNVPGRNRvVFDCDLYSQqEPWEIWEAFKTrrphdlrLNKDIYFFTQHKKMSSTDKRVRR 98 
                                59************************8775544999**997659****753333223333334588****************** PP

                        NAM  77 atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 + sg+Wk   + k+v s  +g++vglkk  ++ +  + + ++  W++he+ l
  Rmu_sc0000898.1_g000025.1  99 NVGSGTWKGDDSGKPVRSVeTGRVVGLKKRYTYKN--EDSVHNGCWILHEFYL 149
                                ********9999999998768999********984..5555699*******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    
MQREFPMENS RGNQLPGQRF CPMDDELVLF YLKPMLSGQN VPGRNRVVFD CDLYSQQEPW  60
EIWEAFKTRR PHDLRLNKDI YFFTQHKKMS STDKRVRRNV GSGTWKGDDS GKPVRSVETG  120
RVVGLKKRYT YKNEDSVHNG CWILHEFYLD QSLRDKKHKV KDYVLCLLRK NGEPKTKIEN  180
KRKQREEEEV LDNNYAFDDG ENSNMEQEEF HEPQAKRQRT VPSIDNAPLT MQSQDDAAFT  240
AELEESLECF KDDNAPQTVP SEDDAAFAAA LEESLECFED DNAPLTMSSE DEAAFAAELE  300
ESLECFEDDN APSEAHAIGF QFDENGGQQP LAAEVQAGPS FGDDPGIFNM LQEEDFLLEE  360
MLEQMRIEKE EPVLNGVSSN IDVAEDVVNS TLLYAPTSSM SAAYDGCTDM PYLSSENGCI  420
IDPSGSNNVC GGSIGFQDGA YWVESLVEVP TDEQQKTADK DCSGWLESIN FSPEENNFFW  480
SEMQYWCS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.29e-17NAC family protein