PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000938.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 468aa MW: 51450.9 Da PI: 9.7389

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000938.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.7	4.7e-12	107	151	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Rmu_sc0000938.1_g000005.1 107 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 151 789***************77.*****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MPKQNLHQLQ PTIPRGSVQI RRRKKFANFL APSEKSPKPD SVSNFCMVSK NPTPPDGLYL 60 DPNEMALPGL GPFASVATAA TTTASTSSSA EDLSKKIRKP YTITKSRESW TEPEHDKFLE 120 ALQLFDRDWK KIEAFIGSKT VIQIRSHAQK YFLKVQKNGT SEHLPPPRPK RKASHPYPQK 180 ASKNVLALPQ VSGSCQSSSA LLESAFIQRP DSSSVLISPI PGGVVPSWPN SSVQTANLSH 240 ETKGPAKPSC NSVESTPNAQ PPSETTDQGN RSLNHNHPLR VLPDFCQVYG FIGSVFDPNT 300 SGHLQTLKKM DPIDVETVLL LMRNLSMNLT SPDFEDHRKL LSSYKIDADT TDHLDASKSL 360 HSDQQKNTCC LHHGDPSYVT FRSFIESHTK SHSPSSSTQP NIKSILPSGS YNSTVGFSFG 420 SQRRGGSGSS LAWSLGSFRY RHMSTTIGDG SDKMDDIGNV AEVIRLWK

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MPKQNLHQLQ PTIPRGSVQI RRRKKFANFL APSEKSPKPD SVSNFCMVSK NPTPPDGLYL  60
DPNEMALPGL GPFASVATAA TTTASTSSSA EDLSKKIRKP YTITKSRESW TEPEHDKFLE  120
ALQLFDRDWK KIEAFIGSKT VIQIRSHAQK YFLKVQKNGT SEHLPPPRPK RKASHPYPQK  180
ASKNVLALPQ VSGSCQSSSA LLESAFIQRP DSSSVLISPI PGGVVPSWPN SSVQTANLSH  240
ETKGPAKPSC NSVESTPNAQ PPSETTDQGN RSLNHNHPLR VLPDFCQVYG FIGSVFDPNT  300
SGHLQTLKKM DPIDVETVLL LMRNLSMNLT SPDFEDHRKL LSSYKIDADT TDHLDASKSL  360
HSDQQKNTCC LHHGDPSYVT FRSFIESHTK SHSPSSSTQP NIKSILPSGS YNSTVGFSFG  420
SQRRGGSGSS LAWSLGSFRY RHMSTTIGDG SDKMDDIGNV AEVIRLWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.1	1e-121	MYB_related family protein