PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000949.1_g000023.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 249aa    MW: 27559.6 Da    PI: 8.322
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000949.1_g000023.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.34.8e-173091257
                               T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               ++R+ +t++q+++L+elF++   r p++e+++++  +l    +++ +++++WF N+Ra+ek+
  Rmu_sc0000949.1_g000023.1 30 STRWIPTTDQIRILKELFYNkgVRSPTTEQIQRICLQLkwygKIEGKNIFYWFVNQRAREKQ 91
                               58*****************7789*************************************97 PP
2Wus_type_Homeobox95.45e-312993265
          Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                               ++tRW Pt++Qi+iL+el++ +G+r+P++e+iqri  +L+ yGkie+kN+fyWF N++aRe+qk+
  Rmu_sc0000949.1_g000023.1 29 SSTRWIPTTDQIRILKELFYnKGVRSPTTEQIQRICLQLKWYGKIEGKNIFYWFVNQRAREKQKK 93
                               689**************98769*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MDPQNRQPTE DGGSNKAVGS SVNMLRRKSS TRWIPTTDQI RILKELFYNK GVRSPTTEQI  60
QRICLQLKWY GKIEGKNIFY WFVNQRAREK QKKRSTSDVH VPMQRSGLVG NDNLTNWKHE  120
DQYINFESSA PASASSAGVM ISFNGQMGNY GGYGSMNMEK SSRDCSISAG GGTSSTFFDM  180
NGEQTFMEQR GEDHQEIETL SLFPVHGEDI CGNMKTTSDG GGGHGGGSHT SLELSLSCEG  240
KAGKNFQSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-29WOX family protein