PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000981.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family CO-like
Protein Properties Length: 330aa    MW: 36564.7 Da    PI: 5.6645
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000981.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.31.7e-09436436
                   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                               + C+ +++  ++lfC+ ++ +lC +C +++H  
  Rmu_sc0000981.1_g000006.1  4 KLCDSCKSATATLFCRADSAFLCVNCDTKIHAA 36
                               68*****************************55 PP
2zf-B_box28.82.5e-094691342
                   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                                + C+ +e+ +++  C+ ++  lC +C  e+H+       H++vp+
  Rmu_sc0000981.1_g000006.1 46 VWLCEVCEQAPAHVTCKADDATLCVTCDREIHSAnplsrrHERVPV 91
                               679*****************************66899999*99986 PP
3CCT69.96.3e-24269312144
                        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Rmu_sc0000981.1_g000006.1 269 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 312
                                9*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MASKLCDSCK SATATLFCRA DSAFLCVNCD TKIHAANKLA SRHARVWLCE VCEQAPAHVT  60
CKADDATLCV TCDREIHSAN PLSRRHERVP VAPFYDSLNS DDSTAVKSDA AVNFLDDRYL  120
SDGDGDGETT EVSREEAEAA SWLLPNPKDL NSGQYVFSDM DPYLDLDYGG VDPKAQTQEE  180
QNSSGTDGVV PVQSKTVQPQ TFEMELPGSK PFIYGYHGHC LSQSVSSSSS MDVSVVPDGN  240
MLTDMSDPYT KSIGDQLSHP AVQISSADRE ARVLRYREKR KNRKFEKTIR YASRKAYAET  300
RPRIKGRFAK RTEAEIEAER LCRYGVVPSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-134CO-like family protein