PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000986.1_g000011.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 312aa    MW: 35506 Da    PI: 10.3069
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000986.1_g000011.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.72.2e-18261051599
                                -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                         B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                 +++p kf+++h  +  +  + +l+ +sg++ +v+l  +k+ ++ ++   GW +Fvk+++L+ gDf+vF++dg+s+f  +vk++
  Rmu_sc0000986.1_g000011.1  26 GVRIPPKFTKNHIRP--SLCKCVLRGPSGQRCDVEL--EKRENGlFFHNHGWHRFVKDHRLQFGDFLVFRYDGESKF--KVKIY 103
                                579******888555..3448***************..99999978888************************9999..99999 PP

                                -S CS
                         B3  98 rk 99 
                                ++
  Rmu_sc0000986.1_g000011.1 104 DR 105
                                87 PP
2B345.81.1e-142012891299
                                HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                         B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                ++ r+++pk+ a + g+   ++kt+ +ed++gr W  kl       ++k ++  +++GW +  kan++ +gD+vvF+++++s  
  Rmu_sc0000986.1_g000011.1 201 SRYRMMIPKDLAVTKGLM--SKKTIEIEDSTGRLWPAKLVSltskeNNKTCGLAMSTGWGDCSKANKIAVGDTVVFEFVKQSVI 282
                                5678********999887..5679***************7778888888899*************************9875555 PP

                                ..EEEEE-S CS
                         B3  91 elvvkvfrk 99 
                                  ++++frk
  Rmu_sc0000986.1_g000011.1 283 --RLHIFRK 289
                                ..7777776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MITLVFAPTR LIYTPTRTRV IASGMGVRIP PKFTKNHIRP SLCKCVLRGP SGQRCDVELE  60
KRENGLFFHN HGWHRFVKDH RLQFGDFLVF RYDGESKFKV KIYDRTCCEI DVEVAKRRNG  120
LPAAPLANEG YQLAWVKDEI VDLKTEYYNR DDTENADKRR RNNHMSGKPP RVEDGKETST  180
GSIIFKSEYS CFKATLKTRC SRYRMMIPKD LAVTKGLMSK KTIEIEDSTG RLWPAKLVSL  240
TSKENNKTCG LAMSTGWGDC SKANKIAVGD TVVFEFVKQS VIRLHIFRKG LGTRGGNNRP  300
NPVVLDAPNI KN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-15B3 family protein