PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000986.1_g000032.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family SBP
Protein Properties Length: 188aa    MW: 20597.6 Da    PI: 9.2605
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000986.1_g000032.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP98.17.5e-3173141277
                                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                Cq+++C adl +ak yhrrhkvCe+hska+ v+vsg +qr       fhel efDe+krsCrrrLa+hnerrrk++
  Rmu_sc0000986.1_g000032.1  73 CQADRCGADLGDAKIYHRRHKVCEFHSKAAIVVVSGARQR-------FHELAEFDEAKRSCRRRLAGHNERRRKSS 141
                                **************************************97.......7**************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MDRQTWKEKM LNKNADEVED DSDEDETCGH GSGLISIRFE ENEKHKVKAA GSTGKKSGSS  60
SGGGGGASSA PSCQADRCGA DLGDAKIYHR RHKVCEFHSK AAIVVVSGAR QRFHELAEFD  120
EAKRSCRRRL AGHNERRRKS SGEPYGEGSS RRGISHQYRS ESTQATTKYH MTSPAPGNTA  180
NSKHFQIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.14e-41SBP family protein