PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000988.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 353aa MW: 39976 Da PI: 7.9227

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000988.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.4	9.4e-56	22	148	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeel+++yL+kkv ++++ + ++i +vd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWk Rmu_sc0000988.1_g000005.1 22 LPPGFRFHPTDEELISHYLHKKVIDSNFGC-KAIGDVDLNKSEPWDLPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWK 104 79***********************999.88***********99999*************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 atgkdke+++ +++lvg+kktLvfy grapkgek++Wvmheyrle Rmu_sc0000988.1_g000005.1 105 ATGKDKEIYK-GKSLVGMKKTLVFYGGRAPKGEKSNWVMHEYRLE 148 ******.999***************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MQEMEKFAVQ AGTFREDDQI DLPPGFRFHP TDEELISHYL HKKVIDSNFG CKAIGDVDLN 60 KSEPWDLPYK AKMGEKEWYF FCVRDRKYPT GLRTNRATEA GYWKATGKDK EIYKGKSLVG 120 MKKTLVFYGG RAPKGEKSNW VMHEYRLEGK FSVHNLPKSA RNEWVICRVF EKSAGGKKIH 180 ITGLVNSGPH GTEMGSSGLP PLLDSAPYNG AKTRPASESN YVPCFSNHES IDSQRNQGIV 240 DYINSNPLFS VSSNPLNNNN AFPRVTYQNS LCSAPVSSAN FQFPSSVLMQ DHLRALLENN 300 VSFMRQNFKT ERDMVSVSQE TGLTTEVNPE ISSVMPNPEM GRRPFDDQDN FWM

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MQEMEKFAVQ AGTFREDDQI DLPPGFRFHP TDEELISHYL HKKVIDSNFG CKAIGDVDLN  60
KSEPWDLPYK AKMGEKEWYF FCVRDRKYPT GLRTNRATEA GYWKATGKDK EIYKGKSLVG  120
MKKTLVFYGG RAPKGEKSNW VMHEYRLEGK FSVHNLPKSA RNEWVICRVF EKSAGGKKIH  180
ITGLVNSGPH GTEMGSSGLP PLLDSAPYNG AKTRPASESN YVPCFSNHES IDSQRNQGIV  240
DYINSNPLFS VSSNPLNNNN AFPRVTYQNS LCSAPVSSAN FQFPSSVLMQ DHLRALLENN  300
VSFMRQNFKT ERDMVSVSQE TGLTTEVNPE ISSVMPNPEM GRRPFDDQDN FWM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-141	NAC family protein