PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000998.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 162aa MW: 18679.7 Da PI: 6.8521

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000998.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00018	91	113	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H Rmu_sc0000998.1_g000012.1 91 SCSVCSRVYPTSRLLSIHVSEaH 113 6*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence
MAMELELGFP YWKALRRKFG PESPFFASGN LERELLVKQL ALDLTEDEKR ELRNFVDEEG 60 RGVFCPIVGC GAKLTCLEDF EDHYNARHTA SCSVCSRVYP TSRLLSIHVS EAHSSFFQAK 120 VARGDPMVFP VYVVVCWCCL RNDDVIRFCF PPRYVMMCFC LR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	1e-61	C2H2 family protein