PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001010.1_g000015.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 659aa    MW: 75458.5 Da    PI: 6.8113
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001010.1_g000015.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.58.2e-1162886574374
                       GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                                 L +cA+a++s d+ ++++lL+++++++sp+gd++qRl +yf+ +L+arla++++  y+ +++ +ts    ++ l a++l++ +
  Rmu_sc0001010.1_g000015.1 288 ILNQCAQAMASYDQCAVNELLKQIRQHSSPHGDATQRLSHYFADGLEARLAGTMTPSYSPVASMQTS---AADILRAHRLYVTA 368
                                799*************************************************999999888888887...9************* PP

                       GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                                sP+ k+s+++aN +I+e ++ ++r+HiiDf+is+G+QWp+L+q +++Rp+gpp+++iT+++ p++g   +e++eetg+rLa+++
  Rmu_sc0001010.1_g000015.1 369 SPLKKMSNFVANTTIMELAKDATRLHIIDFGISYGFQWPCLIQHISERPGGPPQIQITAIELPQPGfrPTERVEETGRRLARYC 452
                                *****************************************************************9****************** PP

                       GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                                ++++vpfe+nv +a+++e++++e+L+++++E ++Vn++++l +++de+v ++s+rd+vLkl+k+++P+++v+   +  ++ + F
  Rmu_sc0001010.1_g000015.1 453 AKFNVPFEYNV-IAQKWESIRVEDLNIDRNELIVVNCMHRLRHIPDETVMVSSPRDRVLKLIKKINPDLFVHGIINGTYSPPFF 535
                                **********9.7*********************************************************************** PP

                       GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                                ++rf eal ++ alfd++ea +pre+++r++ Ere+ gr+i nvvaceg er+er et+++W+ r  + GFk+vpl+++  +++
  Rmu_sc0001010.1_g000015.1 536 VTRFKEALFHFGALFDMFEAIVPREDQWRQMFEREIYGRDIINVVACEGLERVERPETYKQWNLRTLRTGFKQVPLEQDCLMKV 619
                                ************************************************************************************ PP

                       GRAS 338 klllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                k++l+ ++  + +r++e+ +++++gWk+r ++++S+W+
  Rmu_sc0001010.1_g000015.1 620 KSMLKLTSyHKDFRIDEDGEWMLQGWKGRIVMALSFWK 657
                                ******999999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    
MDTLLKRFYG SASVSSNQNL ANRFQVNHES TNPLFPTNFN HPYRPCTPSE EDTCDNNDCN  60
NPMLKYISDT LLEEDLEGKP CMLQNCLALQ AAEKSFYDLL NPKYRPTFDQ PPLSVYQSFE  120
NSDDDSTQSC HSSIGSVTPV TPKTNPFHVE SSFAETISDT ILVSHSLSQM ERLGFLGVRE  180
AIKNVVYEPE NDSYSSTNGP KGKKHQQRED GNNPYNGRSN KQSAASVQDF EPQEMFEKVF  240
LCQGENHESE CCSPREFIKS EESGKLRLKR QPRGSKKHNN KVVDICTILN QCAQAMASYD  300
QCAVNELLKQ IRQHSSPHGD ATQRLSHYFA DGLEARLAGT MTPSYSPVAS MQTSAADILR  360
AHRLYVTASP LKKMSNFVAN TTIMELAKDA TRLHIIDFGI SYGFQWPCLI QHISERPGGP  420
PQIQITAIEL PQPGFRPTER VEETGRRLAR YCAKFNVPFE YNVIAQKWES IRVEDLNIDR  480
NELIVVNCMH RLRHIPDETV MVSSPRDRVL KLIKKINPDL FVHGIINGTY SPPFFVTRFK  540
EALFHFGALF DMFEAIVPRE DQWRQMFERE IYGRDIINVV ACEGLERVER PETYKQWNLR  600
TLRTGFKQVP LEQDCLMKVK SMLKLTSYHK DFRIDEDGEW MLQGWKGRIV MALSFWKPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-173GRAS family protein