PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001010.1_g000052.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 832aa    MW: 93811 Da    PI: 5.9529
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001010.1_g000052.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.31.1e-1094568291373
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl 83 
                                l++lL+ cA+avs++d++  ++lL+++++++sp gd  qRla++f+++L+ar+a+  +++ +++   s +s+++ +++l+ +++
  Rmu_sc0001010.1_g000052.1 456 LRNLLILCAQAVSTNDFRTSTELLKQIRQHSSPFGDGSQRLAHFFANGLEARMAG--TGTGNQFyYISVASKQKAVDKLKCYQV 537
                                6899**************************************************9..444444436666666779********* PP

                       GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerL 165
                                   ++P+ ++s +  N++I + +e+++++Hi+Df+i +G+QWp L+++L++Rp+gpp+lRiTg++ p++g   +e +eetg+rL
  Rmu_sc0001010.1_g000052.1 538 HLSACPFKRMSMFFKNKMIFKMAEKATTLHIVDFGILYGFQWPILIHKLSTRPGGPPKLRITGIEVPQPGfrPAEWIEETGRRL 621
                                *********************************************************************9*99*********** PP

                       GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                                a+++++++vpfefn+++ +++e++++e+L+v+++E+laVn++l+  +llde+v+++ +rd+vLkl+++l+P+++v++  +  +n
  Rmu_sc0001010.1_g000052.1 622 ARYCKRFNVPFEFNAIALQNWESIQVEDLKVERNEVLAVNCMLRFTNLLDETVEVNCPRDSVLKLIRRLKPDIFVHTIVNGAYN 705
                                ************************************************************************************ PP

                       GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                                ++ F++rf eal ++sal+d++++++pr+s er + E e+ g+e++nv+aceg +r+er et+++W+ r ++aG+k +pl+++ 
  Rmu_sc0001010.1_g000052.1 706 APFFVTRFREALFHFSALYDAFDVNIPRDSPERLVFETEFYGQEAMNVIACEGIQRVERAETYKQWQVRCQRAGLKLLPLNQEL 789
                                ************************************************************************************ PP

                       GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                +k  +  ++  + + + ++++s+++++ Wk+r +++ S+W
  Rmu_sc0001010.1_g000052.1 790 VKAFRDKVKAWYHKDFAIDQDSDWMLQAWKGRIVYASSCW 829
                                ************888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    
MDPPYTGLPD FMNDIDFESM LPNSSQFPEI PNQYQFNQLS PDLDSLSNQF SIPPEPVSGS  60
FVPPISVSTE GESLLPNGGS FSLPTTVSPG VDSKSSDDLE FSETVFKYVN QMLMEENIEE  120
KPLMLYDDPL GLRGTEKSFY EVLGQQYPFS PNQQPLYDDQ PNQQPLYVDR KDESPDSYFS  180
GNSSDFNTGS SPSAGTSNSV DSQSLGDYGE QKPSLSETSR SRDNVYQFNS HSNSNSQLSV  240
PLTNSLSSFG GGMSESSVNQ FLAQNIFTDS ESVLQFQRGL EQASKFLPKV NPLVIDLESS  300
TVSPEVKGHA PTDIVNKAKS ERKNRPSRRR GRRKSPNGSR ETKNSPDGSR ERKNSPDGSR  360
GRKNREREDV DSEGGRSRKQ SAIYKGEEDE LSEMFDKVLL FDGSNLSSCG SCGDNVDVQN  420
EESKNLQLNG QPQASNDEGG KARTKKQGKK KETVDLRNLL ILCAQAVSTN DFRTSTELLK  480
QIRQHSSPFG DGSQRLAHFF ANGLEARMAG TGTGNQFYYI SVASKQKAVD KLKCYQVHLS  540
ACPFKRMSMF FKNKMIFKMA EKATTLHIVD FGILYGFQWP ILIHKLSTRP GGPPKLRITG  600
IEVPQPGFRP AEWIEETGRR LARYCKRFNV PFEFNAIALQ NWESIQVEDL KVERNEVLAV  660
NCMLRFTNLL DETVEVNCPR DSVLKLIRRL KPDIFVHTIV NGAYNAPFFV TRFREALFHF  720
SALYDAFDVN IPRDSPERLV FETEFYGQEA MNVIACEGIQ RVERAETYKQ WQVRCQRAGL  780
KLLPLNQELV KAFRDKVKAW YHKDFAIDQD SDWMLQAWKG RIVYASSCWV PA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein