PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001010.1_g000063.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 182aa    MW: 21204.7 Da    PI: 10.3001
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001010.1_g000063.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS79.55.9e-252104271373
                       GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                                +++++pre++ r   E+e++gre+ n+vaceg+er+ r et+++W+ r  +aGF+++pl+ ++++++k  +++ +s  + v+e+
  Rmu_sc0001010.1_g000063.1   2 FDNSFPREDQMRLGFEKEFIGREVLNIVACEGSERIVRPETYKQWQVRNIRAGFRQLPLDREVMNKIKDKVKMGYSPDFVVDED 85 
                                57899**********************************************************************999****** PP

                       GRAS 355 sgslvlgWkdrpLvsvSaW 373
                                 ++++lgWk+r ++   +W
  Rmu_sc0001010.1_g000063.1  86 GHWMLLGWKGRIMFGSACW 104
                                ****************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MFDNSFPRED QMRLGFEKEF IGREVLNIVA CEGSERIVRP ETYKQWQVRN IRAGFRQLPL  60
DREVMNKIKD KVKMGYSPDF VVDEDGHWML LGWKGRIMFG SACWAPSQFL HGIKATKHLT  120
KKNLLFPSLL LLHSMATTDS SLPGPNVAHF LKLTETNYLI WLRQRWTMAA KGQRQRLSEG  180
LH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-44GRAS family protein