PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001010.1_g000064.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 440aa    MW: 49921.5 Da    PI: 8.8297
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001010.1_g000064.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.25e-116654351373
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l+ lL+ cA+avs +d e a++lL+++ +++sp gd  qRla++f++AL+arla++++++y al++++ s    ++ l++++++
  Rmu_sc0001010.1_g000064.1  65 LRALLILCAQAVSVDDRETASELLKQIMQHSSPFGDCAQRLAHCFANALEARLAGTGTQIYTALSTKRMS---AADMLKYYQAY 145
                                5789************************************************************999998...9********** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                  ++P+ k+s + aN +Il+a+e++e++HiiDf+i +G+QWpaL++ L+ Rp+gpp+lRiTg++ p+sg   +e ++etg+rLa
  Rmu_sc0001010.1_g000064.1 146 ITACPLNKMSLIFANDMILKAAEKAETLHIIDFGIRYGFQWPALIHCLSRRPGGPPKLRITGLEFPSSGfrPEEGVQETGHRLA 229
                                ********************************************************************9*************** PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                k++++++vpfe+ + +ak+++++++++L+v+++E+laVn+v + ++lldes+ ++s+rd+vLkl+++l+P+v+v +  + +h +
  Rmu_sc0001010.1_g000064.1 230 KYCRRFNVPFEYYA-IAKKWDTVQFDDLKVQRNEVLAVNCVCRFKNLLDESAVVNSPRDTVLKLIRKLNPDVFVQSVVNGSHHA 312
                                **************.7******************************************************************** PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                + F+ rf eal ++salfd+l+++lpre++ r   E+e++gre+vn+vaceg++r+ r et+++W+ r ++aGF+++pl+ +++
  Rmu_sc0001010.1_g000064.1 313 PFFVPRFREALFHFSALFDMLDTNLPREDQMRLGFEKEFIGREVVNIVACEGFQRIVRPETYKQWQIRNMRAGFRQLPLDREVM 396
                                ************************************************************************************ PP

                       GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                +++k  +++ +   + v+e+ +++++gWk+r L++  +W
  Rmu_sc0001010.1_g000064.1 397 NKIKDKVKMGYHPSFVVDEDGHWMLQGWKGRILYASACW 435
                                ***********999************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    
MDGEEGELSD IFYKVLLSKP IKSKDDQVSQ NGANNSLQPD GLSVGIGNGK VCGKNQGNKK  60
EVIDLRALLI LCAQAVSVDD RETASELLKQ IMQHSSPFGD CAQRLAHCFA NALEARLAGT  120
GTQIYTALST KRMSAADMLK YYQAYITACP LNKMSLIFAN DMILKAAEKA ETLHIIDFGI  180
RYGFQWPALI HCLSRRPGGP PKLRITGLEF PSSGFRPEEG VQETGHRLAK YCRRFNVPFE  240
YYAIAKKWDT VQFDDLKVQR NEVLAVNCVC RFKNLLDESA VVNSPRDTVL KLIRKLNPDV  300
FVQSVVNGSH HAPFFVPRFR EALFHFSALF DMLDTNLPRE DQMRLGFEKE FIGREVVNIV  360
ACEGFQRIVR PETYKQWQIR NMRAGFRQLP LDREVMNKIK DKVKMGYHPS FVVDEDGHWM  420
LQGWKGRILY ASACWAPSRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein