PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001010.1_g000066.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 109aa    MW: 13027.1 Da    PI: 9.2128
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001010.1_g000066.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS82.66.9e-261104270373
                       GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                                +l+++lpre++ r   E+e++gre+vn+vaceg++r+ r et+++W+ r ++aGF+++pl+ ++++++k  +++ +   + v+e
  Rmu_sc0001010.1_g000066.1   1 MLDTNLPREDQMRLGFEKEFIGREVVNIVACEGFQRIVRPETYKQWQIRNMRAGFRQLPLDREVMNKIKDKVKMGYHPSFVVDE 84 
                                589*************************************************************************999***** PP

                       GRAS 354 esgslvlgWkdrpLvsvSaW 373
                                + ++++  Wk+r L++  +W
  Rmu_sc0001010.1_g000066.1  85 DGHWMLHEWKGRILYASACW 104
                                ******************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    
MLDTNLPRED QMRLGFEKEF IGREVVNIVA CEGFQRIVRP ETYKQWQIRN MRAGFRQLPL  60
DREVMNKIKD KVKMGYHPSF VVDEDGHWML HEWKGRILYA SACWAPSRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.17e-46GRAS family protein