PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001010.1_g000077.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 663aa    MW: 74566.5 Da    PI: 6.4181
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001010.1_g000077.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3681.3e-1122886581373
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l+ lL++cAeavs +d e a++lL+++ +++sp gd +qRla++f++AL+arla++++++y al++++ s    +++l++++++
  Rmu_sc0001010.1_g000077.1 288 LRALLISCAEAVSVDDRETASELLKQIMQHSSPFGDCTQRLAHCFANALEARLAGTGTQIYTALTTKRMS---AADSLKFYQAY 368
                                5789*********************************************************999999998...99********* PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                  v+P++k+  + aN++Il+a+e++e++HiiDf+i +G+QWpaL++ L+ Rp+gpp+lRiTg++ p+sg   +e ++etg+rLa
  Rmu_sc0001010.1_g000077.1 369 IAVCPFMKLLMIFANNMILKAAEKAETLHIIDFGIRYGFQWPALIHCLSRRPGGPPKLRITGLEFPSSGfrPEEGVQETGHRLA 452
                                ********************************************************************9*************** PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                k++++++v+fe++  +ak++e+l++++L+v+++E+laVn   + ++llde+v ++s+rd+vL+l+++l+P+v+v +  +  h +
  Rmu_sc0001010.1_g000077.1 453 KYCRRFNVHFEYHG-IAKKWETLQVDDLKVQRNEVLAVNGLNRFKNLLDETVVVNSPRDTVLNLIRNLNPDVFVQSVVNGCHHA 535
                                **************.7******************************************************************** PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                + F+ rf eal ++salfd+l+++lpre++ r   E+e++gre+vn+vaceg++r+ r et+++W+ r ++aGF+++pl+ +++
  Rmu_sc0001010.1_g000077.1 536 PFFVPRFQEALFHFSALFDMLDTNLPREDQMRLGFEKEFIGREVVNIVACEGFQRIVRPETYKQWQIRNMRAGFRQLPLDREVM 619
                                ************************************************************************************ PP

                       GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                +++k   ++ +   + v e+  +++  Wk+r +++  +W
  Rmu_sc0001010.1_g000077.1 620 NKIKDKAKMGYHPSFVVYEDGRWMLHEWKGRIMYASACW 658
                                ***********999************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    
MDPRFSEFPN FNDHTLLPDM LNEYPSSDPS QDLSFVDPNP INSSSSFSPE GDDGEFSDSV  60
LKYINQVLIK EDIESKPSMF HDPLALQATV ESLHEVIGGG KYPTSQDLNP LSVDQDVYGN  120
GNGMAGSYRS ELMVPDVLSK NELLLQFNLG AEEGSKFLPR GQLISAEGNK PYAVADRKAG  180
DVAVTTQKNG SERFRVGSRG KKNHQREDID LEDGRSNKQS AVYMDGEEGE LSDIFDKVLL  240
SKPIKSKDDQ VSQNGANNSL QQDGLSVGIG NGKVCGKNQG NKKEVIDLRA LLISCAEAVS  300
VDDRETASEL LKQIMQHSSP FGDCTQRLAH CFANALEARL AGTGTQIYTA LTTKRMSAAD  360
SLKFYQAYIA VCPFMKLLMI FANNMILKAA EKAETLHIID FGIRYGFQWP ALIHCLSRRP  420
GGPPKLRITG LEFPSSGFRP EEGVQETGHR LAKYCRRFNV HFEYHGIAKK WETLQVDDLK  480
VQRNEVLAVN GLNRFKNLLD ETVVVNSPRD TVLNLIRNLN PDVFVQSVVN GCHHAPFFVP  540
RFQEALFHFS ALFDMLDTNL PREDQMRLGF EKEFIGREVV NIVACEGFQR IVRPETYKQW  600
QIRNMRAGFR QLPLDREVMN KIKDKAKMGY HPSFVVYEDG RWMLHEWKGR IMYASACWAP  660
SRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein