PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001010.1_g000086.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 634aa    MW: 71767.5 Da    PI: 5.8801
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001010.1_g000086.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.62.3e-11026862910373
                       GRAS  10 eavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                                ea+s +d e a++lL+++ +++sp gd +qRla++f++AL+arla++++++y al++++ s    +++l++++++  v+P++k+
  Rmu_sc0001010.1_g000086.1 268 EALSVDDRETASELLKQIMQHSSPFGDCTQRLAHCFANALEARLAGTGTQIYTALTTKRMS---AADSLKFYQAYIAVCPFMKL 348
                                688899**********************************************999999998...99****************** PP

                       GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp 175
                                  + aN +Il+a++++e++HiiDf+i +G+QWpaL++ L+ Rp+gpp+lRiTgv+ p+sg   +e ++etg+rLak++++++v+
  Rmu_sc0001010.1_g000086.1 349 LMIFANDMILKAAKKAETLHIIDFGILYGFQWPALIHCLSRRPGGPPKLRITGVELPSSGfrPEEGVQETGHRLAKYCRRFNVH 432
                                ***********************************************************9************************ PP

                       GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                                fe+   +ak++e+l++++Lrv+++E+laVn+  + ++llde+v  +s+rd+vL+l+++l+P+v+v +  + +h ++ F+ rf +
  Rmu_sc0001010.1_g000086.1 433 FEYYG-IAKKWETLQFDDLRVQRNEVLAVNCLCRFKYLLDETVVANSPRDTVLNLIRKLNPDVFVQSVVNGSHHAPFFVPRFRQ 515
                                *****.7***************************************************************************** PP

                       GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                                al ++salfd+l+++lp++++ r   E+e++gre+vn+vaceg++r+ r et+++W+ r ++aGF+++pl+ ++++++k  +++
  Rmu_sc0001010.1_g000086.1 516 ALFHFSALFDMLDNNLPPDDQMRLGFEKEFIGREVVNIVACEGSQRIVRPETFKQWQIRNMRAGFRQLPLDREVMNKIKDKVKM 599
                                ************************************************************************************ PP

                       GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                 +   + v+e+ +++++gWk+r +++  +W
  Rmu_sc0001010.1_g000086.1 600 GYHPYFVVDEDGHWMLQGWKGRIMFASACW 629
                                **999************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    
MDPRFSEFPN FNDQTLLPDM LNEYPSSDPF EDLSFLDPNP SNYALSSSFS PEGDDGEFSD  60
SVLNYINNVL MEEDMESKPC MFHDPLALQA TEKSLYEVIG GKYPPSQDQN RADQNVHGNG  120
NGNGMVGCEL MVPDVICKNE LLVQFNRGAE EGSKFLPRHQ LISAEGIKPY AVADRKAGDV  180
VVTTQKNGSE HFRVGSRGKK NHQREDIDLE DGRSNKQSAV YMDGEEGELS DIFDKVLLCK  240
PIMSKDDIFS QNGANNGLQQ DGLSVGIEAL SVDDRETASE LLKQIMQHSS PFGDCTQRLA  300
HCFANALEAR LAGTGTQIYT ALTTKRMSAA DSLKFYQAYI AVCPFMKLLM IFANDMILKA  360
AKKAETLHII DFGILYGFQW PALIHCLSRR PGGPPKLRIT GVELPSSGFR PEEGVQETGH  420
RLAKYCRRFN VHFEYYGIAK KWETLQFDDL RVQRNEVLAV NCLCRFKYLL DETVVANSPR  480
DTVLNLIRKL NPDVFVQSVV NGSHHAPFFV PRFRQALFHF SALFDMLDNN LPPDDQMRLG  540
FEKEFIGREV VNIVACEGSQ RIVRPETFKQ WQIRNMRAGF RQLPLDREVM NKIKDKVKMG  600
YHPYFVVDED GHWMLQGWKG RIMFASACWA PSRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein